Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021607.1 Corchorus olitorius cultivar O-4 contig21640, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 694

Length: 1158
ACGTcount: A:0.21, C:0.20, G:0.18, T:0.41


Found at i:844 original size:153 final size:154

Alignment explanation


    Indices: 5--1157  Score: 1785
    Period size: 154  Copynumber: 7.5  Consensus size: 154

          1 TTTA

                     *        *                     *                        
          5 GAACACTTGCTATTTTGGTCCTATCGGGGCCCATTAGTTCTGTTTTGAATCGTCTTCGATTTGGC
          1 GAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGC

                                                                     *       
         70 AAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCA-TTTGGTGAGTTTAGTCC
         66 AAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC

                                    
        134 ACTGTGAAGTTTTTAGCTCATTTG
        131 ACTGTGAAGTTTTTAGCTCATTTG

                                                          *    *             
        158 GAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTCAATCTTCTTCGATTTGGC
          1 GAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGC

                                                   *       *          *      
        223 AAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACCATAATCAGTTTGGTGAGAGTAGTCC
         66 AAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC

                *   *      *        
        288 ACTGAGAACTTTTTACCTCATTTG
        131 ACTGTGAAGTTTTTAGCTCATTTG

                                          *         *                     *  
        312 GAACACTTGTTATTTTGGGCCTATCGGGGCTCATTAGTTCTGTTTTGAATCGTCTTCGATTTAGC
          1 GAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGC

               *                           *                     *           
        377 AAATCTCAATGCTTTTCTTTCCATTGTTTATTGCCTAACTATAATCATTTTGGGGAGATTAGTCC
         66 AAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC

               *                    *
        442 ACTATGAAGTTTTTAGCTCATTTTA
        131 ACTGTGAAGTTTTTAGCTCA-TTTG

                *    *         *    *                *                     **
        467 GAACTCTTGCTATTTTAGGTCCTACCGGGGCCCATTAGTTCTGTTTTGAATCGTCTTCGATTTAA
          1 GAACACTTGTTATTTT-GGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGG

                          *                 *                     *          
        532 CAAACCTCAATGCTATTCTTTCCATTGTTTATTGCCTAACTATAATCATTTTGGGGAGATTAGTC
         65 CAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTC

                           *          
        597 CACTGTGAAGTTTTAAAGCTCATTTG
        130 CACTGTGAAGTTTT-TAGCTCATTTG

                                          *                                * 
        623 GAACACTTGTTATTTTGGGCCTATCGGGGCTCATTAGTTCCGTTTTGAATCGTCTTCGATTTGTC
          1 GAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGC

                                                *                            
        688 AAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTCACTATAATCATTTTGGTGAGATTAGTCC
         66 AAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC

                     *      *       
        753 ACTGTGAA-ATTTTAGTTCATTTG
        131 ACTGTGAAGTTTTTAGCTCATTTG

                                                                    *        
        776 GAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTTGATTTGGC
          1 GAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGC

                                                   *       *          *      
        841 AAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACCATAATCAGTTTGGTGAGAGTAGTCC
         66 AAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC

                    *      *        
        906 ACTGTGAACTTTTTACCTCATTTG
        131 ACTGTGAAGTTTTTAGCTCATTTG

                                          *                   *              
        930 GAACACTTGTTATTTTGGGCCTATCGGGGCTCATTAGTTCCGTTTTGAATAGTCTTCGATTTGGC
          1 GAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGC

                             *              *                                
        995 AAACCTCAATGC-TTTCCTTCCGATTGTTTATTGCCTAACTATAATCATTTTGGTGAGATTAGTC
         66 AAACCTCAATGCTTTTCTTTCC-ATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTC

                                    *
       1059 CACTGTGAAGTTTTTAGCTCATTTA
        130 CACTGTGAAGTTTTTAGCTCATTTG

                            *             *                   *              
       1084 GAACACTTGTTATTTTCGGCCTATCGGGGCTCATTAGTTCCG-TTTGAATAGTCTTCGATTT-GC
          1 GAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGC

                       
       1147 AAACCTCAATG
         66 AAACCTCAATG

       1158 T


Statistics
Matches: 919,  Mismatches: 75, Indels: 13
        0.91            0.07        0.01

Matches are distributed among these distances:
 152   13  0.01
 153  273  0.30
 154  361  0.39
 155  129  0.14
 156  137  0.15
 157    6  0.01

ACGTcount: A:0.21, C:0.20, G:0.18, T:0.41


Consensus pattern (154 bp):   
GAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGC
AAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCC
ACTGTGAAGTTTTTAGCTCATTTG
Done.