Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021608.1 Corchorus olitorius cultivar O-4 contig21641, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19849

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
786--840
21
2.6
21
85
0
74
18
45
21
14
1.85
4122--4155
15
2.2
16
94
5
61
14
5
14
64
1.46
5395--5670
90
3.1
90
88
4
405
34
24
13
27
1.93
6295--6323
2
14.5
2
100
0
58
51
0
0
48
1.00
8111--8171
30
2.0
30
87
6
88
44
1
16
37
1.58
8691--8726
11
3.2
12
85
14
51
8
13
5
72
1.27
9198--9259
27
2.3
27
83
2
72
20
19
20
38
1.93
9186--9259
26
2.8
26
79
2
85
20
17
22
39
1.92
9749--9788
20
2.0
20
90
0
62
30
10
20
40
1.85
15281--15468
62
3.0
62
93
0
322
15
15
18
50
1.79
17239--17282
11
3.8
11
80
11
52
77
11
2
9
1.08
18106--18181
29
2.7
29
82
10
77
35
6
21
36
1.79
19520--19559
15
2.6
16
92
4
64
12
10
12
65
1.49

Tables:   1

The End!