Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021609.1 Corchorus olitorius cultivar O-4 contig21642, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17073
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.34


Found at i:12244 original size:12 final size:12

Alignment explanation


    Indices: 12229--12260  Score: 64
    Period size: 12  Copynumber: 2.7  Consensus size: 12

      12219 CCTGTGTGGT

                        
      12229 GAGAGTTTAACC
          1 GAGAGTTTAACC

                        
      12241 GAGAGTTTAACC
          1 GAGAGTTTAACC

                    
      12253 GAGAGTTT
          1 GAGAGTTT

      12261 GAGTAGCTTT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   20  1.00

ACGTcount: A:0.31, C:0.12, G:0.28, T:0.28


Consensus pattern (12 bp):   
GAGAGTTTAACC
Done.