Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021610.1 Corchorus olitorius cultivar O-4 contig21643, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44347

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68--104
18
2.0
18
89
5
56
8
18
0
72
1.08
1142--1204
30
2.1
31
84
3
83
22
9
20
47
1.78
942--1428
136
3.6
136
87
3
669
30
12
18
38
1.88
1278--1340
30
2.1
31
84
3
83
22
9
20
47
1.78
8682--8719
11
3.5
11
85
10
51
57
2
0
39
1.12
9486--9656
85
2.0
85
93
2
290
33
13
2
50
1.54
12523--12565
22
2.0
22
85
0
59
44
4
16
34
1.68
15838--15911
28
2.7
27
83
4
85
40
25
16
17
1.90
16039--16165
64
2.0
64
88
0
191
20
13
30
35
1.91
17464--17523
22
2.7
22
86
0
84
25
43
26
5
1.75
29966--30000
6
5.8
6
89
0
52
2
2
14
80
0.95
30243--30271
12
2.3
13
94
5
51
79
0
20
0
0.74
33958--34027
36
1.9
36
100
0
140
18
25
11
44
1.83
36211--36253
21
2.1
21
86
4
61
27
20
18
32
1.96
36364--36405
21
2.0
21
95
0
75
33
26
19
21
1.97
41346--41371
12
2.2
12
100
0
52
7
0
23
69
1.14
43413--43509
38
2.6
38
88
5
142
35
13
14
37
1.85
44302--44339
2
19.0
2
100
0
76
50
0
0
50
1.00

Tables:   1

The End!