Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021616.1 Corchorus olitorius cultivar O-4 contig21649, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30048

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6414--6483
22
3.2
22
61
15
54
32
8
24
34
1.86
6399--6495
44
2.2
44
100
0
194
31
9
25
32
1.88
6424--6493
22
3.2
22
61
15
54
34
7
24
34
1.83
6465--6524
31
1.9
32
93
3
104
40
5
21
33
1.75
7843--7885
21
2.1
21
86
4
61
25
23
18
32
1.97
7853--7890
20
2.0
20
85
15
53
28
21
15
34
1.94
13956--14014
22
2.7
22
81
0
73
37
13
8
40
1.75
14083--14164
22
4.0
20
78
9
85
32
14
13
39
1.85
14323--14422
22
4.7
21
80
9
105
37
8
20
35
1.82
14348--15331
44
22.8
43
68
13
345
36
10
16
36
1.83
14521--15331
22
37.6
21
69
15
256
36
10
16
36
1.84
14521--15331
66
12.6
63
68
13
291
36
10
16
36
1.84
15453--15512
22
2.7
22
84
0
75
33
8
13
45
1.73
17917--18081
21
7.9
21
83
0
197
27
13
26
32
1.93
17913--18081
42
4.0
41
87
5
250
28
13
25
31
1.94
19541--20003
178
2.6
176
80
4
486
33
13
16
36
1.88
28001--28103
18
5.1
18
75
24
98
46
0
18
34
1.49
28017--28101
24
3.8
24
80
17
119
44
0
18
36
1.50
28001--28103
42
2.5
42
100
0
206
46
0
18
34
1.49
29283--29324
21
2.0
21
100
0
84
19
19
28
33
1.96

Tables:   1

The End!