Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021618.1 Corchorus olitorius cultivar O-4 contig21651, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14861
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30


Found at i:12185 original size:46 final size:48

Alignment explanation


    Indices: 12082--12188  Score: 146
    Period size: 48  Copynumber: 2.3  Consensus size: 48

      12072 AGGAACAATA

                                   **         *             
      12082 AAAAGTAAAAGATCAATTTTATCTTAAAAATTGAGAAAAAGTGCAAGG
          1 AAAAGTAAAAGATCAATTTTATCGCAAAAATTGAAAAAAAGTGCAAGG

                *               * *                         
      12130 AAAAATAAAAGATCAATTTTGTGGCAAAAATTGAAAAAAAGTGC-A-G
          1 AAAAGTAAAAGATCAATTTTATCGCAAAAATTGAAAAAAAGTGCAAGG

                         
      12176 AAAAGTAAAAGAT
          1 AAAAGTAAAAGAT

      12189 TGCTTTGAGT


Statistics
Matches: 52,  Mismatches: 7, Indels: 2
        0.85            0.11        0.03

Matches are distributed among these distances:
  46   13  0.25
  47    1  0.02
  48   38  0.73

ACGTcount: A:0.55, C:0.06, G:0.17, T:0.22


Consensus pattern (48 bp):   
AAAAGTAAAAGATCAATTTTATCGCAAAAATTGAAAAAAAGTGCAAGG
Done.