Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01021632.1 Corchorus olitorius cultivar O-4 contig21665, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55079
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:6931 original size:144 final size:141
Alignment explanation
Indices: 6772--7043 Score: 354
Period size: 147 Copynumber: 1.9 Consensus size: 141
6762 GTCATTTAAG
* * *
6772 AAATATATTT-TAAAAATTCTAATATATCTAAGTTTTTT-A-ATTAAATTAGTAAAATGATAAAA
1 AAATATATTTAAAAAAATT-TAATATATATAAGTTTTTTAATATTAAAATAGTAAAATGATAAAA
*
6834 A-TAAAATAGGTATAAGGATATTATTATAATTATAATTAAATAAAAATAGAGTTTTTAGTTGAGT
65 ACT-AAATAGGTATAAGG--A-TATTA-AATT-TAATTAAATAAAAATAGAATTTTTAGTTGAGT
6898 AAAAGTGTAAAACTATAA
124 AAAAGTGTAAAACTATAA
* *
6916 AAATATATTTAAAAAAATTTAATGTATATAAGTTTTTTAATTATTAAAATAGTAAAATGGTAAAA
1 AAATATATTTAAAAAAATTTAATATATATAAGTTTTTTAA-TATTAAAATAGTAAAATGATAAAA
* * * *
6981 ACTAAATAGTTATAAGGATATTAGATTTAGTTAAATAAAAATAGAATTTTTTGTTGAGTAAAA
65 ACTAAATAGGTATAAGGATATTAAATTTAATTAAATAAAAATAGAATTTTTAGTTGAGTAAAA
7044 CCATAAAAAT
Statistics
Matches: 113, Mismatches: 10, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
142 33 0.29
143 3 0.03
144 32 0.28
145 9 0.08
147 35 0.31
148 1 0.01
ACGTcount: A:0.50, C:0.01, G:0.10, T:0.39
Consensus pattern (141 bp):
AAATATATTTAAAAAAATTTAATATATATAAGTTTTTTAATATTAAAATAGTAAAATGATAAAAA
CTAAATAGGTATAAGGATATTAAATTTAATTAAATAAAAATAGAATTTTTAGTTGAGTAAAAGTG
TAAAACTATAA
Found at i:7146 original size:2 final size:2
Alignment explanation
Indices: 7139--7173 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
7129 GTACTTTTTA
7139 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7174 CGAATAAGGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7541 original size:13 final size:14
Alignment explanation
Indices: 7516--7546 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
7506 TTATAATTCA
7516 ATTTATAAAATATT
1 ATTTATAAAATATT
7530 ATTTAT-AAATATT
1 ATTTATAAAATATT
7543 ATTT
1 ATTT
7547 GGAATTACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
ATTTATAAAATATT
Found at i:10403 original size:22 final size:22
Alignment explanation
Indices: 10374--10494 Score: 131
Period size: 22 Copynumber: 5.5 Consensus size: 22
10364 GTTAAAATTT
*
10374 AAAATTTCATAGTTAGGTTATC
1 AAAATTTCATAGGTAGGTTATC
* *
10396 AAAGTTTCATATGG-AGTTTATC
1 AAAATTTCATA-GGTAGGTTATC
* **
10418 ACAATTTCATAGGTAAATTATC
1 AAAATTTCATAGGTAGGTTATC
10440 AAAATTTCATAGCGT-GGTTATC
1 AAAATTTCATAG-GTAGGTTATC
*
10462 AAAATTTAATAGGGTA-GTTATC
1 AAAATTTCATA-GGTAGGTTATC
10484 AAAATTTCATA
1 AAAATTTCATA
10495 AAAATATTTA
Statistics
Matches: 82, Mismatches: 12, Indels: 10
0.79 0.12 0.10
Matches are distributed among these distances:
21 2 0.02
22 76 0.93
23 4 0.05
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (22 bp):
AAAATTTCATAGGTAGGTTATC
Found at i:12502 original size:21 final size:21
Alignment explanation
Indices: 12476--12588 Score: 176
Period size: 21 Copynumber: 5.4 Consensus size: 21
12466 TGCTAGGAGT
12476 TCATTGGAGGAA-GTTCCAAGC
1 TCATTGGA-GAAGGTTCCAAGC
12497 TCATTGGAGCAA-GTTCCAAGC
1 TCATTGGAG-AAGGTTCCAAGC
12518 TCATTGGAGAAGGTTCCAAGC
1 TCATTGGAGAAGGTTCCAAGC
*
12539 TTATTGGAGAAGGTTCCAAGC
1 TCATTGGAGAAGGTTCCAAGC
*
12560 TCATTGGAGAAGGTTTCAAGC
1 TCATTGGAGAAGGTTCCAAGC
12581 TCATTGGA
1 TCATTGGA
12589 ATTGCCTAAG
Statistics
Matches: 87, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
20 3 0.03
21 84 0.97
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (21 bp):
TCATTGGAGAAGGTTCCAAGC
Found at i:23025 original size:15 final size:16
Alignment explanation
Indices: 22993--23031 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
22983 CACTTTGCTC
22993 TGTTTTCTAGTATAAT
1 TGTTTTCTAGTATAAT
*
23009 TGTTTTCT-GTTTAAT
1 TGTTTTCTAGTATAAT
*
23024 TGCTTTCT
1 TGTTTTCT
23032 TTCAACCTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.15, C:0.10, G:0.13, T:0.62
Consensus pattern (16 bp):
TGTTTTCTAGTATAAT
Found at i:23279 original size:31 final size:30
Alignment explanation
Indices: 23206--23279 Score: 130
Period size: 30 Copynumber: 2.4 Consensus size: 30
23196 TTTGGCGCCG
23206 TTGCCGGGGAAGGGTAACTTTTTCTGGTAT
1 TTGCCGGGGAAGGGTAACTTTTTCTGGTAT
*
23236 TTGCCGGGGAAGGGTAACTTTTTCTGGTTT
1 TTGCCGGGGAAGGGTAACTTTTTCTGGTAT
23266 TTGCCAGGGGAAGG
1 TTGCC-GGGGAAGG
23280 AAAATAGACT
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
30 34 0.81
31 8 0.19
ACGTcount: A:0.16, C:0.14, G:0.36, T:0.34
Consensus pattern (30 bp):
TTGCCGGGGAAGGGTAACTTTTTCTGGTAT
Found at i:25720 original size:15 final size:16
Alignment explanation
Indices: 25687--25726 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
25677 TCACTTTGCT
25687 TTGTTTTCTAGTATAA
1 TTGTTTTCTAGTATAA
*
25703 TTGTTTTCT-GTTTAA
1 TTGTTTTCTAGTATAA
*
25718 TTGCTTTCT
1 TTGTTTTCT
25727 TTCAACCTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 13 0.59
16 9 0.41
ACGTcount: A:0.15, C:0.10, G:0.12, T:0.62
Consensus pattern (16 bp):
TTGTTTTCTAGTATAA
Found at i:28443 original size:29 final size:30
Alignment explanation
Indices: 28410--28468 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
28400 TATGCTTTGG
28410 GTTTCTTGAT-TG-CTTGGGCTTCTGATTTA
1 GTTTCTT-ATATGACTTGGGCTTCTGATTTA
* *
28439 GTTTCTTTTATGACTTGGGCTTTTGATTTA
1 GTTTCTTATATGACTTGGGCTTCTGATTTA
28469 TATTTTTGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 1 0.04
29 9 0.35
30 16 0.62
ACGTcount: A:0.12, C:0.12, G:0.22, T:0.54
Consensus pattern (30 bp):
GTTTCTTATATGACTTGGGCTTCTGATTTA
Found at i:29578 original size:35 final size:34
Alignment explanation
Indices: 29389--29622 Score: 237
Period size: 34 Copynumber: 6.8 Consensus size: 34
29379 AATTTAGGTC
*
29389 TTTTCAAAGTGGGAAAGTTCCCATCAAGTTTTCATAG
1 TTTTCAAATTGGGAAAGTTCCCATCAAG-TTT--TAG
* *
29426 TTTTCAAATTGGGAAAGTTCCTA-CCAG-----G
1 TTTTCAAATTGGGAAAGTTCCCATCAAGTTTTAG
* *
29454 TTTTCAAATTGGGAAAGTTTCCATCATGTTTTAG
1 TTTTCAAATTGGGAAAGTTCCCATCAAGTTTTAG
* *
29488 TTTTCAAATTGGGAAAGTTCCCATCAGGTTTAAG
1 TTTTCAAATTGGGAAAGTTCCCATCAAGTTTTAG
*
29522 TTTTCAAATTGGGAAAGTTCCCATCAAGTTTTGG
1 TTTTCAAATTGGGAAAGTTCCCATCAAGTTTTAG
* * *
29556 TTTTCAATTTAGGGAAAGTTCCCGTCATTTTCCGTTTTAG
1 TTTTCAAATT-GGGAAAGTTCCCATCA-----AGTTTTAG
*
29596 TTTTCAAAGTGGGAAAGTTCCCATCAA
1 TTTTCAAATTGGGAAAGTTCCCATCAA
29623 AAGCATTTTT
Statistics
Matches: 164, Mismatches: 21, Indels: 27
0.77 0.10 0.13
Matches are distributed among these distances:
28 22 0.13
29 2 0.01
34 72 0.44
35 15 0.09
36 3 0.02
37 21 0.13
39 15 0.09
40 14 0.09
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (34 bp):
TTTTCAAATTGGGAAAGTTCCCATCAAGTTTTAG
Found at i:30332 original size:15 final size:16
Alignment explanation
Indices: 30299--30332 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
30289 AGAGAACATG
30299 TTTTGAGAAAAACCAT
1 TTTTGAGAAAAACCAT
30315 TTTTGAGAAAAACC-T
1 TTTTGAGAAAAACCAT
30330 TTT
1 TTT
30333 ATTACCTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (16 bp):
TTTTGAGAAAAACCAT
Found at i:33348 original size:12 final size:12
Alignment explanation
Indices: 33331--33361 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
33321 CTGTTTTGGG
33331 ATGCGTTGAATC
1 ATGCGTTGAATC
33343 ATGCGTTGAATC
1 ATGCGTTGAATC
*
33355 TTGCGTT
1 ATGCGTT
33362 TATGTGATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.19, C:0.16, G:0.26, T:0.39
Consensus pattern (12 bp):
ATGCGTTGAATC
Found at i:35396 original size:69 final size:69
Alignment explanation
Indices: 35323--35520 Score: 297
Period size: 69 Copynumber: 2.9 Consensus size: 69
35313 CTCTGCTGTA
* * * *
35323 TGGATGGACCCAATGTTTAAACTGACTCGCATGGAAACGAGTTTGACTTATGGAAAAGTCTATAT
1 TGGATGGAACCAAGGCTTAAACTGACTCGTATGGAAACGAGTTTGACTTATGGAAAAGTCTATAT
35388 GGCT
66 GGCT
* * * * * *
35392 TGGATGAAACCAAGGCTTAAACTGACTTGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTATGT
1 TGGATGGAACCAAGGCTTAAACTGACTCGTATGGAAACGAGTTTGACTTATGGAAAAGTCTATAT
35457 GGCT
66 GGCT
*
35461 TGGATGGAACCAAGGCTTAAACTAACTCGTATGGAAACGAGTTTGACTTATGGAAAAGTC
1 TGGATGGAACCAAGGCTTAAACTGACTCGTATGGAAACGAGTTTGACTTATGGAAAAGTC
35521 AAAGCATTCG
Statistics
Matches: 113, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
69 113 1.00
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.27
Consensus pattern (69 bp):
TGGATGGAACCAAGGCTTAAACTGACTCGTATGGAAACGAGTTTGACTTATGGAAAAGTCTATAT
GGCT
Found at i:35727 original size:74 final size:75
Alignment explanation
Indices: 35605--35802 Score: 326
Period size: 74 Copynumber: 2.6 Consensus size: 75
35595 ATACCTTTCG
*
35605 AAAATAACTCTGAATCTGATGTTGTAACTGAAAACTTCTTGATTGATGATGAAAAAGGACCAATG
1 AAAATAACTCTGAGTCTGATGTTGTAACTGAAAACTTCTTGATTGATGATGAAAAAGGACCAATG
35670 TGCGGTCAAC
66 TGCGGTCAAC
* *
35680 -AAATAACTCTTAGTCTGATGTTGTAACTGAAAACTTCTTGATTGATGATGAAAAAGGACCACTG
1 AAAATAACTCTGAGTCTGATGTTGTAACTGAAAACTTCTTGATTGATGATGAAAAAGGACCAATG
35744 TGCGGTCAAC
66 TGCGGTCAAC
35754 TTGAAAAATAACTCTGAGTCTGATGTTGTAACTGAAAACTTCTTGATTG
1 ----AAAATAACTCTGAGTCTGATGTTGTAACTGAAAACTTCTTGATTG
35803 TTGCTTTGAA
Statistics
Matches: 114, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
74 71 0.62
79 43 0.38
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.31
Consensus pattern (75 bp):
AAAATAACTCTGAGTCTGATGTTGTAACTGAAAACTTCTTGATTGATGATGAAAAAGGACCAATG
TGCGGTCAAC
Found at i:36264 original size:50 final size:50
Alignment explanation
Indices: 36200--36394 Score: 261
Period size: 50 Copynumber: 3.9 Consensus size: 50
36190 CTTAAATGCC
* * *
36200 CTTTGAAAAGCGAATTTTGACCTTGGACTCACAACTGGAATGCAATCTTA
1 CTTTGAAAAGCGAATTTTGACCTTGAACTCACAAATGGAAAGCAATCTTA
* *
36250 CTTTCAAAAGCGAATTTTGATCC-TGAACTCACAAATGGAAAGCAATTTTA
1 CTTTGAAAAGCGAATTTTGA-CCTTGAACTCACAAATGGAAAGCAATCTTA
* * *
36300 TTTTGAAAAGCGAATTTTGATCTTGAACTCACAAATGGAAAGAAATCTTA
1 CTTTGAAAAGCGAATTTTGACCTTGAACTCACAAATGGAAAGCAATCTTA
**
36350 -TTAT-AAAAGCGAATTTTGACCTTGGGCTCACAAATGGAAAGCAAT
1 CTT-TGAAAAGCGAATTTTGACCTTGAACTCACAAATGGAAAGCAAT
36395 TTTATTGTAA
Statistics
Matches: 128, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
49 40 0.31
50 86 0.67
51 2 0.02
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.30
Consensus pattern (50 bp):
CTTTGAAAAGCGAATTTTGACCTTGAACTCACAAATGGAAAGCAATCTTA
Found at i:36399 original size:99 final size:100
Alignment explanation
Indices: 36201--36400 Score: 298
Period size: 100 Copynumber: 2.0 Consensus size: 100
36191 TTAAATGCCC
* * * *
36201 TTTGAAAAGCGAATTTTGACCTTGGACTCACAACTGGAATGCAATCTTACTTTCAAAAGCGAATT
1 TTTGAAAAGCGAATTTTGACCTTGAACTCACAAATGGAAAGAAATCTTACTTTCAAAAGCGAATT
36266 TTGATCCTGAACTCACAAATGGAAAGCAATTTTAT
66 TTGATCCTGAACTCACAAATGGAAAGCAATTTTAT
*
36301 TTTGAAAAGCGAATTTTGATCTTGAACTCACAAATGGAAAGAAATCTTA-TTAT-AAAAGCGAAT
1 TTTGAAAAGCGAATTTTGACCTTGAACTCACAAATGGAAAGAAATCTTACTT-TCAAAAGCGAAT
**
36364 TTTGA-CCTTGGGCTCACAAATGGAAAGCAATTTTAT
65 TTTGATCC-TGAACTCACAAATGGAAAGCAATTTTAT
36400 T
1 T
36401 GTAAAACTTC
Statistics
Matches: 91, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
98 2 0.02
99 44 0.48
100 45 0.49
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (100 bp):
TTTGAAAAGCGAATTTTGACCTTGAACTCACAAATGGAAAGAAATCTTACTTTCAAAAGCGAATT
TTGATCCTGAACTCACAAATGGAAAGCAATTTTAT
Found at i:37060 original size:14 final size:14
Alignment explanation
Indices: 37004--37063 Score: 61
Period size: 14 Copynumber: 4.3 Consensus size: 14
36994 AATCAATTCT
*
37004 TTTTTTTTATTTGA
1 TTTTTTTGATTTGA
*
37018 TTTGATTTGA-TTGA
1 TTT-TTTTGATTTGA
*
37032 TTTTTTT-TTTCTGA
1 TTTTTTTGATT-TGA
37046 TTTTTTTGATTTGA
1 TTTTTTTGATTTGA
37060 TTTT
1 TTTT
37064 CGATTTTTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
13 4 0.11
14 27 0.73
15 6 0.16
ACGTcount: A:0.13, C:0.02, G:0.12, T:0.73
Consensus pattern (14 bp):
TTTTTTTGATTTGA
Found at i:42570 original size:16 final size:16
Alignment explanation
Indices: 42549--42582 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
42539 AGAGAACATG
42549 TTTTGAGAAAAACCTT
1 TTTTGAGAAAAACCTT
42565 TTTTGAGAAAAACCTT
1 TTTTGAGAAAAACCTT
42581 TT
1 TT
42583 ATTACCTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (16 bp):
TTTTGAGAAAAACCTT
Found at i:49399 original size:7 final size:7
Alignment explanation
Indices: 49387--49422 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
49377 AAGTAAAAGT
49387 AAAATTG
1 AAAATTG
49394 AAAATTG
1 AAAATTG
49401 AAAATTG
1 AAAATTG
**
49408 AAAAAAG
1 AAAATTG
49415 AAAATTG
1 AAAATTG
49422 A
1 A
49423 TGGAGCAAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.14, T:0.22
Consensus pattern (7 bp):
AAAATTG
Found at i:49406 original size:14 final size:14
Alignment explanation
Indices: 49362--49422 Score: 59
Period size: 14 Copynumber: 4.1 Consensus size: 14
49352 TAAATATGCA
*
49362 AAAAAAAAAAATTG
1 AAAAAAGAAAATTG
49376 AAAGTAAAAGTAAAATTG
1 -AA--AAAAG-AAAATTG
**
49394 AAAATTGAAAATTG
1 AAAAAAGAAAATTG
49408 AAAAAAGAAAATTG
1 AAAAAAGAAAATTG
49422 A
1 A
49423 TGGAGCAAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
14 20 0.53
15 5 0.13
17 6 0.16
18 7 0.18
ACGTcount: A:0.67, C:0.00, G:0.13, T:0.20
Consensus pattern (14 bp):
AAAAAAGAAAATTG
Found at i:50901 original size:47 final size:47
Alignment explanation
Indices: 50839--51072 Score: 274
Period size: 47 Copynumber: 5.0 Consensus size: 47
50829 TCCAAGTTAA
* *
50839 TCTTTTCTCGTTTCCATGCAAGTTTGCAATTTAGTGACCAAAGTTGG
1 TCTTTTCTCGCTTCCATGCAAGTTTACAATTTAGTGACCAAAGTTGG
* * * *
50886 TCTTTTCTCACTTCCATGCGAGTCTACCATTTAGTGACCAAAGTTGG
1 TCTTTTCTCGCTTCCATGCAAGTTTACAATTTAGTGACCAAAGTTGG
* * *
50933 TCTTTTCTCGCTTTCACATG--AGTTTACGATTTGGTGACCAACGTTGG
1 TCTTTTCTCGC-TTC-CATGCAAGTTTACAATTTAGTGACCAAAGTTGG
* **
50980 TCTTTTCTCGGTTCCATGCAAACTTACAATTTAGTGACCAAAGTTGG
1 TCTTTTCTCGCTTCCATGCAAGTTTACAATTTAGTGACCAAAGTTGG
* ** * * *
51027 TCTTTTCTCGCTTCCACGTGAGTTTACTATTTGGTGACCACAGTTG
1 TCTTTTCTCGCTTCCATGCAAGTTTACAATTTAGTGACCAAAGTTG
51073 ACAGTTGTTT
Statistics
Matches: 157, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
45 4 0.03
46 3 0.02
47 143 0.91
48 3 0.02
49 4 0.03
ACGTcount: A:0.20, C:0.22, G:0.19, T:0.39
Consensus pattern (47 bp):
TCTTTTCTCGCTTCCATGCAAGTTTACAATTTAGTGACCAAAGTTGG
Found at i:50995 original size:94 final size:94
Alignment explanation
Indices: 50839--51072 Score: 303
Period size: 94 Copynumber: 2.5 Consensus size: 94
50829 TCCAAGTTAA
* *
50839 TCTTTTCTCG-TTTC-CATGCAAGTTTGCAATTTAGTGACCAAAGTTGGTCTTTTCTCACTTCCA
1 TCTTTTCTCGCTTTCACATG--AGTTTACAATTTGGTGACCAAAGTTGGTCTTTTCTCACTTCCA
* * *
50902 TGC-GAGTCTACCATTTAGTGACCAAAGTTGG
64 TGCAAACT-TACAATTTAGTGACCAAAGTTGG
* * **
50933 TCTTTTCTCGCTTTCACATGAGTTTACGATTTGGTGACCAACGTTGGTCTTTTCTCGGTTCCATG
1 TCTTTTCTCGCTTTCACATGAGTTTACAATTTGGTGACCAAAGTTGGTCTTTTCTCACTTCCATG
50998 CAAACTTACAATTTAGTGACCAAAGTTGG
66 CAAACTTACAATTTAGTGACCAAAGTTGG
* * * *
51027 TCTTTTCTCGCTTCCACGTGAGTTTACTATTTGGTGACCACAGTTG
1 TCTTTTCTCGCTTTCACATGAGTTTACAATTTGGTGACCAAAGTTG
51073 ACAGTTGTTT
Statistics
Matches: 123, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
94 113 0.92
95 6 0.05
96 4 0.03
ACGTcount: A:0.20, C:0.22, G:0.19, T:0.39
Consensus pattern (94 bp):
TCTTTTCTCGCTTTCACATGAGTTTACAATTTGGTGACCAAAGTTGGTCTTTTCTCACTTCCATG
CAAACTTACAATTTAGTGACCAAAGTTGG
Found at i:51120 original size:22 final size:22
Alignment explanation
Indices: 51087--51200 Score: 108
Period size: 22 Copynumber: 5.2 Consensus size: 22
51077 TTGTTTCAAT
51087 TTCAAT-TCTTCAAATTCAATTC
1 TTCAATGT-TTCAAATTCAATTC
* * *
51109 TCCAATGTTTCAATTTCAATTT
1 TTCAATGTTTCAAATTCAATTC
* *
51131 TTCAATGTTTCGAATTCAATCC
1 TTCAATGTTTCAAATTCAATTC
** *
51153 TTCAATACTTCAATTTCAATTC
1 TTCAATGTTTCAAATTCAATTC
*
51175 TTCAA--ATTCAATATTCAATTC
1 TTCAATGTTTCAA-ATTCAATTC
51196 TTCAA
1 TTCAA
51201 GTTCAATCCT
Statistics
Matches: 75, Mismatches: 15, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
20 5 0.07
21 13 0.17
22 56 0.75
23 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.03, T:0.45
Consensus pattern (22 bp):
TTCAATGTTTCAAATTCAATTC
Found at i:51147 original size:44 final size:43
Alignment explanation
Indices: 51099--51505 Score: 294
Period size: 44 Copynumber: 9.6 Consensus size: 43
51089 CAATTCTTCA
* *
51099 AATTCAATTCTCCAATGTTTCAATTTCAATTTTTCAATGTTTC
1 AATTCAATTCTTCAATGTTTCAATTTCAATTCTTCAATGTTTC
* ** *
51142 GAATTCAATCCTTCAATACTTCAATTTCAATTCTTCAA--ATTC
1 -AATTCAATTCTTCAATGTTTCAATTTCAATTCTTCAATGTTTC
51184 AATATTCAATTCTTCAA-G-TTCAA--TC----CTTCAATGTTTC
1 -A-ATTCAATTCTTCAATGTTTCAATTTCAATTCTTCAATGTTTC
*
51221 AAATCCAATTCTTCAATGTTTCAATTTCAATATGC--CAATGTTTC
1 -AATTCAATTCTTCAATGTTTCAATTTCAAT-T-CTTCAATGTTTC
* * * * *
51265 AATTTCAATTATTCAAGGCTTCAATTTCAATTCTTAAATGCTTC
1 AA-TTCAATTCTTCAATGTTTCAATTTCAATTCTTCAATGTTTC
* *
51309 AATTTCAATTCTTCAATGTTTCAAATTCAATTCTTCAATGCTTC
1 AA-TTCAATTCTTCAATGTTTCAATTTCAATTCTTCAATGTTTC
* *
51353 AATTTCAATTCTTCAATGCTTCAA--T--A-T-TTCAATGCTTC
1 AA-TTCAATTCTTCAATGTTTCAATTTCAATTCTTCAATGTTTC
* * * * *
51391 AATTTCAATTATTCAATGCTTCAATATCAATTCTTCAACG-CTC
1 AA-TTCAATTCTTCAATGTTTCAATTTCAATTCTTCAATGTTTC
* ** * * *
51434 TAATTTCAATACTTCAATGCCTCAACTTCAATTCTCCAATGCTTC
1 -AA-TTCAATTCTTCAATGTTTCAATTTCAATTCTTCAATGTTTC
* **
51479 AATTTCAATTATTCAATGCATCAATTT
1 AA-TTCAATTCTTCAATGTTTCAATTT
51506 ACTTCAATGA
Statistics
Matches: 301, Mismatches: 38, Indels: 48
0.78 0.10 0.12
Matches are distributed among these distances:
35 6 0.02
36 13 0.04
37 6 0.02
38 39 0.13
39 3 0.01
40 4 0.01
41 5 0.02
42 7 0.02
43 19 0.06
44 196 0.65
45 2 0.01
46 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.05, T:0.43
Consensus pattern (43 bp):
AATTCAATTCTTCAATGTTTCAATTTCAATTCTTCAATGTTTC
Found at i:51156 original size:8 final size:7
Alignment explanation
Indices: 51145--51487 Score: 108
Period size: 8 Copynumber: 46.9 Consensus size: 7
51135 ATGTTTCGAA
51145 TTCAATCC
1 TTCAAT-C
51153 TTCAATAC
1 TTCAAT-C
51161 TTCAAT-
1 TTCAATC
51167 TTCAATTC
1 TTCAA-TC
*
51175 TTCAA-A
1 TTCAATC
*
51181 TTCAATA
1 TTCAATC
51188 TTCAATTC
1 TTCAA-TC
*
51196 TTCAA-G
1 TTCAATC
51202 TTCAATCC
1 TTCAAT-C
*
51210 TTCAATGT
1 TTCAAT-C
51218 TTCAAATC
1 TTC-AATC
51226 --CAATTC
1 TTCAA-TC
*
51232 TTCAATGT
1 TTCAAT-C
51240 TTCAAT-
1 TTCAATC
*
51246 TTCAATA
1 TTCAATC
* *
51253 TGCCAATGT
1 T-TCAAT-C
51262 TTCAAT-
1 TTCAATC
*
51268 TTCAATTA
1 TTCAA-TC
*
51276 TTCAAGGC
1 TTCAA-TC
51284 TTCAAT-
1 TTCAATC
51290 TTCAATTC
1 TTCAA-TC
*
51298 TTAAATGC
1 TTCAAT-C
51306 TTCAAT-
1 TTCAATC
51312 TTCAATTC
1 TTCAA-TC
*
51320 TTCAATGT
1 TTCAAT-C
*
51328 TTCAA-A
1 TTCAATC
51334 TTCAATTC
1 TTCAA-TC
51342 TTCAATGC
1 TTCAAT-C
51350 TTCAAT-
1 TTCAATC
51356 TTCAATTC
1 TTCAA-TC
51364 TTCAATGC
1 TTCAAT-C
*
51372 TTCAATAT
1 TTCAAT-C
51380 TTCAATGC
1 TTCAAT-C
51388 TTCAAT-
1 TTCAATC
*
51394 TTCAATTA
1 TTCAA-TC
51402 TTCAATGC
1 TTCAAT-C
51410 TTCAAT-
1 TTCAATC
*
51416 ATCAATTC
1 TTCAA-TC
51424 TTCAA-C
1 TTCAATC
*
51430 GCTCTAAT-
1 -TTC-AATC
51438 TTCAATAC
1 TTCAAT-C
51446 TTCAATGC
1 TTCAAT-C
*
51454 CTCAA-C
1 TTCAATC
51460 TTCAATTC
1 TTCAA-TC
*
51468 TCCAATGC
1 TTCAAT-C
51476 TTCAAT-
1 TTCAATC
51482 TTCAAT
1 TTCAAT
51488 TATTCAATGC
Statistics
Matches: 259, Mismatches: 35, Indels: 84
0.69 0.09 0.22
Matches are distributed among these distances:
5 2 0.01
6 73 0.28
7 25 0.10
8 155 0.60
9 4 0.02
ACGTcount: A:0.31, C:0.22, G:0.05, T:0.42
Consensus pattern (7 bp):
TTCAATC
Found at i:51229 original size:22 final size:22
Alignment explanation
Indices: 51188--51415 Score: 239
Period size: 22 Copynumber: 10.3 Consensus size: 22
51178 AAATTCAATA
* * *
51188 TTCAATTCTTCAAGTTCAATCC
1 TTCAATGCTTCAATTTCAATTC
* * *
51210 TTCAATGTTTCAAATCCAATTC
1 TTCAATGCTTCAATTTCAATTC
*
51232 TTCAATGTTTCAATTTCAATATGC
1 TTCAATGCTTCAATTTCAAT-T-C
* *
51256 --CAATGTTTCAATTTCAATTA
1 TTCAATGCTTCAATTTCAATTC
*
51276 TTCAAGGCTTCAATTTCAATTC
1 TTCAATGCTTCAATTTCAATTC
*
51298 TTAAATGCTTCAATTTCAATTC
1 TTCAATGCTTCAATTTCAATTC
* *
51320 TTCAATGTTTCAAATTCAATTC
1 TTCAATGCTTCAATTTCAATTC
51342 TTCAATGCTTCAATTTCAATTC
1 TTCAATGCTTCAATTTCAATTC
*
51364 TTCAATGCTTCAATATTTCAATGC
1 TTCAATGCTTC-A-ATTTCAATTC
*
51388 TTCAAT--TTCAATTATTCAATGC
1 TTCAATGCTTCAA-T-TTCAATTC
51410 TTCAAT
1 TTCAAT
51416 ATCAATTCTT
Statistics
Matches: 179, Mismatches: 19, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
20 1 0.01
21 3 0.02
22 157 0.88
23 2 0.01
24 16 0.09
ACGTcount: A:0.30, C:0.20, G:0.06, T:0.44
Consensus pattern (22 bp):
TTCAATGCTTCAATTTCAATTC
Found at i:51288 original size:66 final size:65
Alignment explanation
Indices: 51144--51505 Score: 280
Period size: 66 Copynumber: 5.6 Consensus size: 65
51134 AATGTTTCGA
* * * *
51144 ATTCAATCCTTCAATACTTCAA-T-TTCAAT-TCTTCAAATTCAATATTCAAT-TCTTCAAGTTC
1 ATTCAATGCTTCAA-A-TTCAATTCTTCAATGT-TTCAATTTCAATATCCAATGT-TTCAATTTC
*
51205 AATC
62 AATT
* * *
51209 CTTCAATGTTTCAAATCCAATTCTTCAATGTTTCAATTTCAATATGCCAATGTTTCAATTTCAAT
1 ATTCAATGCTTCAAATTCAATTCTTCAATGTTTCAATTTCAATAT-CCAATGTTTCAATTTCAAT
51274 T
65 T
* * * * *
51275 ATTCAAGGCTTCAATTTCAATTCTTAAATGCTTCAATTTCAAT-TCTTCAATGTTTCAAATTCAA
1 ATTCAATGCTTCAAATTCAATTCTTCAATGTTTCAATTTCAATATC--CAATGTTTCAATTTCAA
51339 TT
64 TT
* * * * *
51341 CTTCAATGCTTCAATTTCAATTCTTCAATGCTTCAA--T--AT-TTCAATGCTTCAATTTCAATT
1 ATTCAATGCTTCAAATTCAATTCTTCAATGTTTCAATTTCAATATCCAATGTTTCAATTTCAATT
* * * ** *
51401 ATTCAATGCTTC-AATATCAATTCTTCAACG-CTCTAATTTCAATACTTCAATGCCTCAACTTCA
1 ATTCAATGCTTCAAAT-TCAATTCTTCAATGTTTC-AATTTCAATA-TCCAATGTTTCAATTTCA
51464 ATT
63 ATT
* * * * **
51467 CTCCAATGCTTCAATTTCAATTATTCAATGCATCAATTT
1 ATTCAATGCTTCAAATTCAATTCTTCAATGTTTCAATTT
51506 ACTTCAATGA
Statistics
Matches: 246, Mismatches: 34, Indels: 33
0.79 0.11 0.11
Matches are distributed among these distances:
59 4 0.02
60 43 0.17
62 4 0.02
63 4 0.02
64 6 0.02
65 31 0.13
66 149 0.61
67 5 0.02
ACGTcount: A:0.31, C:0.22, G:0.05, T:0.42
Consensus pattern (65 bp):
ATTCAATGCTTCAAATTCAATTCTTCAATGTTTCAATTTCAATATCCAATGTTTCAATTTCAATT
Found at i:51409 original size:104 final size:104
Alignment explanation
Indices: 51268--51482 Score: 299
Period size: 104 Copynumber: 2.1 Consensus size: 104
51258 ATGTTTCAAT
* * * *
51268 TTCAATTATTCAAGGCTTCAATTTCAATTCTTAAATGCTTCAATTTCAATTCTTCAATG-TTTCA
1 TTCAATTATTCAAGGCTTCAATTTCAATTATTAAATGCTTCAATATCAATTCTTCAACGCTCT-A
* * * *
51332 AATTCAATTCTTCAATGCTTCAATTTCAATTCTTCAATGC
65 AATTCAATACTTCAATGCCTCAACTTCAATTCTCCAATGC
* *
51372 TTCAA-TATTTCAATGCTTCAATTTCAATTATTCAATGCTTCAATATCAATTCTTCAACGCTCTA
1 TTCAATTA-TTCAAGGCTTCAATTTCAATTATTAAATGCTTCAATATCAATTCTTCAACGCTCTA
*
51436 ATTTCAATACTTCAATGCCTCAACTTCAATTCTCCAATGC
65 AATTCAATACTTCAATGCCTCAACTTCAATTCTCCAATGC
51476 TTCAATT
1 TTCAATT
51483 TCAATTATTC
Statistics
Matches: 97, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
103 2 0.02
104 92 0.95
105 3 0.03
ACGTcount: A:0.30, C:0.22, G:0.05, T:0.42
Consensus pattern (104 bp):
TTCAATTATTCAAGGCTTCAATTTCAATTATTAAATGCTTCAATATCAATTCTTCAACGCTCTAA
ATTCAATACTTCAATGCCTCAACTTCAATTCTCCAATGC
Found at i:51448 original size:22 final size:22
Alignment explanation
Indices: 51312--51505 Score: 150
Period size: 22 Copynumber: 8.7 Consensus size: 22
51302 ATGCTTCAAT
*
51312 TTCAATTCTTCAATGTTTCAA-A-
1 TTCAATGCTTCAA--TTTCAATAC
*
51334 TTCAATTCTTCAATGCTTCAAT--
1 TTCAATGCTTCAAT--TTCAATAC
* *
51356 TTCAATTCTTCAATGCTTCAATAT
1 TTCAATGCTTCAAT--TTCAATAC
51380 TTCAATGCTTCAATTTCAATTA-
1 TTCAATGCTTCAATTTCAA-TAC
* *
51402 TTCAATGCTTCAATATCAATTC
1 TTCAATGCTTCAATTTCAATAC
*
51424 TTCAACGC-TCTAATTTCAATAC
1 TTCAATGCTTC-AATTTCAATAC
* * *
51446 TTCAATGCCTCAACTTCAATTC
1 TTCAATGCTTCAATTTCAATAC
*
51468 TCCAATGCTTCAATTTCAATTA-
1 TTCAATGCTTCAATTTCAA-TAC
*
51490 TTCAATGCATCAATTT
1 TTCAATGCTTCAATTT
51506 ACTTCAATGA
Statistics
Matches: 147, Mismatches: 15, Indels: 20
0.81 0.08 0.11
Matches are distributed among these distances:
20 1 0.01
21 3 0.02
22 125 0.85
23 5 0.03
24 13 0.09
ACGTcount: A:0.30, C:0.23, G:0.05, T:0.42
Consensus pattern (22 bp):
TTCAATGCTTCAATTTCAATAC
Found at i:51541 original size:31 final size:30
Alignment explanation
Indices: 51504--51561 Score: 98
Period size: 31 Copynumber: 1.9 Consensus size: 30
51494 ATGCATCAAT
*
51504 TTACTTCAATGATCCAGGGTGGTCTTTTTTC
1 TTACTTCAATGATCCAAGGTGGT-TTTTTTC
51535 TTACTTCAATGATCCAAGGTGGTTTTT
1 TTACTTCAATGATCCAAGGTGGTTTTT
51562 CTTCAATTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
30 4 0.15
31 22 0.85
ACGTcount: A:0.19, C:0.17, G:0.19, T:0.45
Consensus pattern (30 bp):
TTACTTCAATGATCCAAGGTGGTTTTTTTC
Found at i:51589 original size:48 final size:48
Alignment explanation
Indices: 51535--51630 Score: 147
Period size: 48 Copynumber: 2.0 Consensus size: 48
51525 GTCTTTTTTC
* * * *
51535 TTACTTCAATGATCCAAGGTGGTTTTTCTTCAATTTCAATTATTCAAT
1 TTACTTCAACGATCCAAGGTGGTCTTTCTTCAAATTAAATTATTCAAT
*
51583 TTACTTCAACGATCCAGGGTGGTCTTTCTTCAAATTAAATTATTCAAT
1 TTACTTCAACGATCCAAGGTGGTCTTTCTTCAAATTAAATTATTCAAT
51631 ACAACTTCAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.28, C:0.18, G:0.11, T:0.43
Consensus pattern (48 bp):
TTACTTCAACGATCCAAGGTGGTCTTTCTTCAAATTAAATTATTCAAT
Found at i:51667 original size:22 final size:22
Alignment explanation
Indices: 51635--51775 Score: 171
Period size: 22 Copynumber: 6.4 Consensus size: 22
51625 TTCAATACAA
51635 CTTCAATTTCAATAT-TTCAATG
1 CTTCAATTTCAAT-TCTTCAATG
* *
51657 CTTCAAATTCAATTCTCCAATG
1 CTTCAATTTCAATTCTTCAATG
* *
51679 CTTCGATTTCAACATT-TT-GATG
1 CTTCAATTTC-A-ATTCTTCAATG
*
51701 CTTCAATTTCAATACTTCAATG
1 CTTCAATTTCAATTCTTCAATG
51723 CTTCAATTTCAATTCTTCAATG
1 CTTCAATTTCAATTCTTCAATG
*
51745 TTTCAATTTCAATTCTTCAATG
1 CTTCAATTTCAATTCTTCAATG
*
51767 TTTCAATTT
1 CTTCAATTT
51776 ACTTCAATGA
Statistics
Matches: 103, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
20 2 0.02
21 4 0.04
22 92 0.89
23 2 0.02
24 3 0.03
ACGTcount: A:0.28, C:0.21, G:0.06, T:0.45
Consensus pattern (22 bp):
CTTCAATTTCAATTCTTCAATG
Found at i:51718 original size:14 final size:14
Alignment explanation
Indices: 51701--51765 Score: 55
Period size: 14 Copynumber: 4.5 Consensus size: 14
51691 CATTTTGATG
51701 CTTCAAT-TTCAAT
1 CTTCAATCTTCAAT
51714 ACTTCAATGCTTCAAT
1 -CTTCAAT-CTTCAAT
51730 -TTCAATTCTTCAAT
1 CTTCAA-TCTTCAAT
*
51744 GTTTCAAT-TTCAATT
1 -CTTCAATCTTCAA-T
51759 CTTCAAT
1 CTTCAAT
51766 GTTTCAATTT
Statistics
Matches: 44, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
14 30 0.68
15 3 0.07
16 11 0.25
ACGTcount: A:0.29, C:0.22, G:0.03, T:0.46
Consensus pattern (14 bp):
CTTCAATCTTCAAT
Found at i:51771 original size:8 final size:7
Alignment explanation
Indices: 51702--51775 Score: 55
Period size: 8 Copynumber: 10.1 Consensus size: 7
51692 ATTTTGATGC
51702 TTCAA-T
1 TTCAATT
*
51708 TTCAATAC
1 TTCAAT-T
*
51716 TTCAATGC
1 TTCAAT-T
51724 TTCAA-T
1 TTCAATT
51730 TTCAATT
1 TTCAATT
51737 CTTCAATGT
1 -TTCAAT-T
51746 TTCAA-T
1 TTCAATT
51752 TTCAATT
1 TTCAATT
51759 CTTCAATGT
1 -TTCAAT-T
51768 TTCAATT
1 TTCAATT
51775 T
1 T
51776 ACTTCAATGA
Statistics
Matches: 57, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
6 16 0.28
7 4 0.07
8 35 0.61
9 2 0.04
ACGTcount: A:0.28, C:0.19, G:0.04, T:0.49
Consensus pattern (7 bp):
TTCAATT
Found at i:51820 original size:56 final size:56
Alignment explanation
Indices: 51746--51922 Score: 255
Period size: 56 Copynumber: 3.2 Consensus size: 56
51736 TCTTCAATGT
* * **
51746 TTCAATTTCAATTCTTCAATGTTTCAATTTACTTCAATGATCCAGGGTGGTCTTTC
1 TTCAATTTTAATTATTCAATGCATCAATTTACTTCAATGATCCAGGGTGGTCTTTC
*
51802 TTCAATTTTAATTATTCAATGCGTCAATTTACTTCAATGATCCAGGGTGGTCTTTC
1 TTCAATTTTAATTATTCAATGCATCAATTTACTTCAATGATCCAGGGTGGTCTTTC
* * * * * *
51858 TTCAATTTTAATTATTCAATGCACCAATTTACTTCTATGATTCAAGATGATCTTTC
1 TTCAATTTTAATTATTCAATGCATCAATTTACTTCAATGATCCAGGGTGGTCTTTC
51914 TTCAATTTT
1 TTCAATTTT
51923 TCAATTTATT
Statistics
Matches: 110, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 110 1.00
ACGTcount: A:0.26, C:0.18, G:0.11, T:0.45
Consensus pattern (56 bp):
TTCAATTTTAATTATTCAATGCATCAATTTACTTCAATGATCCAGGGTGGTCTTTC
Found at i:52006 original size:127 final size:127
Alignment explanation
Indices: 51867--52216 Score: 583
Period size: 127 Copynumber: 2.8 Consensus size: 127
51857 CTTCAATTTT
* * *
51867 AATTATTCAATGCACCAATTTACTTCTATGATTCAAGATGATCTTTCTTCAATTTTTCAATTTAT
1 AATTATTCAATGCACCAATTTACTTCAATGATTCAGGATGATCTTTCTTCAATTCTTCAATTTAT
* *
51932 TTTCGATTGATCCAGGGTGGTCTTTCTTCATTTCTTCAACTATTCAAACGCTTCAGTTCTTC
66 TTTCGATTGATCCAGGGTGGTCTTTCTTCAATTCTTCAACTATCCAAACGCTTCAGTTCTTC
51994 AATTATTCAATGCACCAATTTACTTCAATGATTCAGGATGATCTTTCTTCAATTCTTCAATTTAT
1 AATTATTCAATGCACCAATTTACTTCAATGATTCAGGATGATCTTTCTTCAATTCTTCAATTTAT
** * *
52059 TTTCGATTGATATAGGGTGGCCTTTCTTCAATTCTTCAACTATCCAAACGCTTTAGTTCTTC
66 TTTCGATTGATCCAGGGTGGTCTTTCTTCAATTCTTCAACTATCCAAACGCTTCAGTTCTTC
* * *
52121 AATTATTCAGTGCTCCAATTTACTTCAATGATTCAGGATGATCTTTCTTCAATTCTTCAAATTAT
1 AATTATTCAATGCACCAATTTACTTCAATGATTCAGGATGATCTTTCTTCAATTCTTCAATTTAT
*
52186 TTTCGATTGATCCAGGGTGGTCTTTCCTCAA
66 TTTCGATTGATCCAGGGTGGTCTTTCTTCAA
52217 GATTACAAAT
Statistics
Matches: 207, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
127 207 1.00
ACGTcount: A:0.25, C:0.20, G:0.11, T:0.43
Consensus pattern (127 bp):
AATTATTCAATGCACCAATTTACTTCAATGATTCAGGATGATCTTTCTTCAATTCTTCAATTTAT
TTTCGATTGATCCAGGGTGGTCTTTCTTCAATTCTTCAACTATCCAAACGCTTCAGTTCTTC
Done.