Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021634.1 Corchorus olitorius cultivar O-4 contig21667, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2996
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32


Found at i:1834 original size:121 final size:122

Alignment explanation


    Indices: 1694--1937  Score: 436
    Period size: 121  Copynumber: 2.0  Consensus size: 122

       1684 AAATCAATAA

                   *                          *                              
       1694 TTTGAAACATTTTGGGGAATAATATATGATCAATCAAAAACAATCCAAAAACAAACAATTTTATA
          1 TTTGAAAAATTTTGGGGAATAATATATGATCAATAAAAAACAATCCAAAAACAAACAATTTTATA

                       *                                             
       1759 T-CTAAGTTCTTATGCAAATAAATAACATATGACTCAATTATTCAAGCAATAAACCC
         66 TCCTAAGTTCTCATGCAAATAAATAACATATGACTCAATTATTCAAGCAATAAACCC

                                                                          *  
       1815 TTTGAAAAATTTTGGGGAATAATATATGATCAATAAAAAACAATCCAAAAACAAACAATTTTCTA
          1 TTTGAAAAATTTTGGGGAATAATATATGATCAATAAAAAACAATCCAAAAACAAACAATTTTATA

                                     *                               
       1880 TCCTAAGTTCTCATGCAAATAAATAGCATATGACTCAATTATTCAAGCAATAAACCC
         66 TCCTAAGTTCTCATGCAAATAAATAACATATGACTCAATTATTCAAGCAATAAACCC

             
       1937 T
          1 T

       1938 ATCAAGCTAT


Statistics
Matches: 117,  Mismatches: 5, Indels: 1
        0.95            0.04        0.01

Matches are distributed among these distances:
 121   63  0.54
 122   54  0.46

ACGTcount: A:0.46, C:0.16, G:0.09, T:0.30


Consensus pattern (122 bp):   
TTTGAAAAATTTTGGGGAATAATATATGATCAATAAAAAACAATCCAAAAACAAACAATTTTATA
TCCTAAGTTCTCATGCAAATAAATAACATATGACTCAATTATTCAAGCAATAAACCC
Done.