Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021638.1 Corchorus olitorius cultivar O-4 contig21671, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55515

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2988--3025
20
1.9
20
94
0
67
55
10
0
34
1.34
3957--4012
22
2.4
24
77
14
64
58
3
5
32
1.37
9206--9280
35
2.1
35
95
0
132
41
17
17
24
1.90
17357--17396
19
2.1
19
86
9
55
25
2
0
72
0.97
17357--17396
9
4.2
9
87
9
53
25
2
0
72
0.97
18526--18568
22
2.0
22
90
4
70
20
23
20
34
1.96
28875--29329
22
21.0
22
72
12
266
36
16
9
36
1.82
29435--29847
22
18.6
22
69
15
208
34
15
9
40
1.80
29729--30087
66
5.2
66
70
15
255
36
17
8
37
1.81
29688--30083
44
9.2
43
72
13
191
36
17
8
37
1.80
29851--30084
22
10.5
22
74
9
179
37
16
8
37
1.80
30302--30637
165
2.0
172
84
8
456
43
8
10
37
1.70
47329--47362
7
4.9
7
96
0
59
29
2
0
67
1.05
53741--53832
21
4.4
21
93
2
150
29
17
27
26
1.97
54701--54747
26
1.9
24
87
12
69
27
25
4
42
1.73
54841--54869
14
2.1
14
100
0
58
24
13
13
48
1.79
54882--54906
8
3.1
8
100
0
50
84
0
0
16
0.63

Tables:   1

The End!