Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021640.1 Corchorus olitorius cultivar O-4 contig21673, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13656
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34


Found at i:9092 original size:6 final size:6

Alignment explanation


    Indices: 9091--9125  Score: 56
    Period size: 6  Copynumber: 6.2  Consensus size: 6

       9081 TTTTTTTGTT

                                                       
       9091 TTTTTG TTTTTG -TTTTG TTTTTG -TTTTG TTTTTG T
          1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG T

       9126 GTTGTTGTCA


Statistics
Matches: 27,  Mismatches: 0, Indels: 4
        0.87            0.00        0.13

Matches are distributed among these distances:
   5   10  0.37
   6   17  0.63

ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83


Consensus pattern (6 bp):   
TTTTTG

Found at i:9106 original size:11 final size:11

Alignment explanation


    Indices: 9092--9131  Score: 71
    Period size: 11  Copynumber: 3.6  Consensus size: 11

       9082 TTTTTTGTTT

                       
       9092 TTTTGTTTTTG
          1 TTTTGTTTTTG

                       
       9103 TTTTGTTTTTG
          1 TTTTGTTTTTG

                       
       9114 TTTTGTTTTTG
          1 TTTTGTTTTTG

             *     
       9125 TGTTGTT
          1 TTTTGTT

       9132 GTCAAATTTT


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  11   28  1.00

ACGTcount: A:0.00, C:0.00, G:0.20, T:0.80


Consensus pattern (11 bp):   
TTTTGTTTTTG
Done.