Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021641.1 Corchorus olitorius cultivar O-4 contig21674, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9594
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33


Found at i:755 original size:21 final size:21

Alignment explanation


    Indices: 729--799  Score: 108
    Period size: 21  Copynumber: 3.4  Consensus size: 21

        719 TGCTAGAAGA

                                  
        729 TCATTGGAGCAA-GTTCCAAGC
          1 TCATTGGAG-AAGGTTCCAAGC

                                *
        750 TCATTGGAGAAGGTTCCAAGA
          1 TCATTGGAGAAGGTTCCAAGC

                 *               
        771 TCATTAGAGAAGGTTCCAAGC
          1 TCATTGGAGAAGGTTCCAAGC

                    
        792 TCATTGGA
          1 TCATTGGA

        800 ATTGCCTAAG


Statistics
Matches: 45,  Mismatches: 4, Indels: 2
        0.88            0.08        0.04

Matches are distributed among these distances:
  20    2  0.04
  21   43  0.96

ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25


Consensus pattern (21 bp):   
TCATTGGAGAAGGTTCCAAGC
Done.