Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021643.1 Corchorus olitorius cultivar O-4 contig21676, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15363

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9356--9412
28
2.0
28
100
0
114
40
7
14
38
1.73
12641--12674
11
3.2
11
83
8
52
73
0
14
11
1.10
12822--12903
21
3.9
21
69
20
64
48
4
24
21
1.69
12853--12927
21
3.5
20
77
15
62
50
5
24
20
1.68
12820--13065
42
5.8
42
69
17
168
52
4
21
21
1.66
12888--12937
15
3.4
15
86
2
66
52
4
24
20
1.63
12848--12963
50
2.3
50
77
4
119
52
4
23
19
1.64
12895--12991
28
3.4
27
75
19
74
55
3
22
18
1.56
12902--13064
77
2.2
74
76
11
170
53
4
20
20
1.63
12899--12998
35
2.9
33
76
19
96
56
4
22
18
1.58
12970--13049
21
3.8
22
76
14
87
56
5
18
20
1.60
13108--13178
33
2.1
34
86
2
99
54
2
15
26
1.55
13175--13249
26
2.8
27
79
4
89
60
4
18
17
1.52
14489--14535
25
1.9
24
82
4
58
27
4
42
25
1.73

Tables:   1

The End!