Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021644.1 Corchorus olitorius cultivar O-4 contig21677, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6380
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.35


Found at i:271 original size:25 final size:24

Alignment explanation


    Indices: 243--289  Score: 58
    Period size: 25  Copynumber: 1.9  Consensus size: 24

        233 GGCTAGGGTT

                *                    
        243 TTGATCGGTTTGAGAGAAGGAAGTG
          1 TTGAACGGTTTGAGAG-AGGAAGTG

                 *        *       
        268 TTGAAGGGTTTGAGCGAGGAAG
          1 TTGAACGGTTTGAGAGAGGAAG

        290 AAGAAGAAGT


Statistics
Matches: 19,  Mismatches: 3, Indels: 1
        0.83            0.13        0.04

Matches are distributed among these distances:
  24    6  0.32
  25   13  0.68

ACGTcount: A:0.28, C:0.04, G:0.43, T:0.26


Consensus pattern (24 bp):   
TTGAACGGTTTGAGAGAGGAAGTG
Done.