Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021645.1 Corchorus olitorius cultivar O-4 contig21678, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27004

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1051--1123
27
2.7
27
89
0
110
20
26
23
30
1.99
1111--1179
27
2.6
27
92
0
120
26
36
18
18
1.94
2676--2719
2
22.5
2
88
4
63
45
2
0
52
1.13
2945--3007
21
3.0
21
75
13
67
42
1
4
50
1.32
5693--5731
12
3.3
12
85
3
53
0
23
0
76
0.78
9461--9519
23
2.6
23
91
0
91
22
20
11
45
1.83
9461--9530
23
3.1
22
86
8
88
22
20
14
42
1.88
9542--9579
15
2.5
15
86
0
58
18
26
13
42
1.87
15645--15695
22
2.3
20
75
18
57
62
7
5
23
1.44
16971--17006
19
1.9
18
88
5
54
27
22
8
41
1.82
18522--18568
18
2.6
18
83
6
60
42
0
8
48
1.33
21038--21094
17
3.4
17
80
0
69
24
29
21
24
1.99
22805--22901
32
3.0
32
66
22
85
39
6
18
36
1.76
25200--25299
22
4.6
21
75
8
67
37
20
11
32
1.87
25290--25336
25
1.9
24
83
12
60
38
10
8
42
1.70
25409--25451
22
2.0
22
90
0
68
34
18
11
34
1.87
25466--25590
22
5.7
22
78
11
123
39
10
10
40
1.74
25449--25593
44
3.3
44
76
7
143
37
12
9
40
1.76

Tables:   1

The End!