Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021650.1 Corchorus olitorius cultivar O-4 contig21683, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36108

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4976--5035
29
2.1
29
93
0
102
36
10
20
33
1.86
9036--9139
30
3.5
30
71
15
88
26
23
23
26
2.00
25259--25388
42
3.0
44
83
5
185
45
8
20
25
1.79
25559--25682
62
2.1
58
89
6
185
40
26
8
25
1.83
28200--28378
44
4.0
44
88
5
263
40
9
24
25
1.85
28546--28669
62
2.1
61
83
6
155
41
21
9
27
1.84
32834--32881
16
3.1
15
71
11
51
54
29
10
6
1.59
33083--33185
32
3.2
32
87
2
145
35
36
11
15
1.84
33136--33187
16
3.2
16
73
10
61
36
38
9
15
1.80
33941--34053
28
3.7
30
83
14
142
35
15
15
33
1.89
33940--34086
67
2.3
63
88
9
212
35
15
17
31
1.91

Tables:   1

The End!