Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021652.1 Corchorus olitorius cultivar O-4 contig21685, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 22380
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30


Found at i:14099 original size:18 final size:18

Alignment explanation


    Indices: 14078--14112  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

      14068 GTCATGGAAA

                *             
      14078 TACTTAAGAAAATAAAAG
          1 TACTAAAGAAAATAAAAG

                    *        
      14096 TACTAAAGGAAATAAAA
          1 TACTAAAGAAAATAAAA

      14113 TCCTAAGCCA


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.63, C:0.06, G:0.11, T:0.20


Consensus pattern (18 bp):   
TACTAAAGAAAATAAAAG
Done.