Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021653.1 Corchorus olitorius cultivar O-4 contig21686, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3532
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32


Found at i:705 original size:15 final size:15

Alignment explanation


    Indices: 675--716  Score: 75
    Period size: 15  Copynumber: 2.7  Consensus size: 15

        665 TTACTTTGTT

                            
        675 TTGTTTTCTAGTTTAA
          1 TTGTTTTCT-GTTTAA

                           
        691 TTGTTTTCTGTTTAA
          1 TTGTTTTCTGTTTAA

                       
        706 TTGTTTTCTGT
          1 TTGTTTTCTGT

        717 CAACCTCTGT


Statistics
Matches: 26,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  15   17  0.65
  16    9  0.35

ACGTcount: A:0.12, C:0.07, G:0.14, T:0.67


Consensus pattern (15 bp):   
TTGTTTTCTGTTTAA
Done.