Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021667.1 Corchorus olitorius cultivar O-4 contig21700, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5578
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31


Found at i:2086 original size:46 final size:46

Alignment explanation


    Indices: 2019--2127  Score: 218
    Period size: 46  Copynumber: 2.4  Consensus size: 46

       2009 TTAGATAAAG

                                                          
       2019 CTCTTGATCCAGTGTGAATTATCCCTTTTATTCTTTAAATAATTAC
          1 CTCTTGATCCAGTGTGAATTATCCCTTTTATTCTTTAAATAATTAC

                                                          
       2065 CTCTTGATCCAGTGTGAATTATCCCTTTTATTCTTTAAATAATTAC
          1 CTCTTGATCCAGTGTGAATTATCCCTTTTATTCTTTAAATAATTAC

                             
       2111 CTCTTGATCCAGTGTGA
          1 CTCTTGATCCAGTGTGA

       2128 TAATTACTCA


Statistics
Matches: 63,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  46   63  1.00

ACGTcount: A:0.25, C:0.20, G:0.11, T:0.44


Consensus pattern (46 bp):   
CTCTTGATCCAGTGTGAATTATCCCTTTTATTCTTTAAATAATTAC
Done.