Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002167.1 Corchorus olitorius cultivar O-4 contig02167, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 679

Length: 1132
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36


Found at i:448 original size:16 final size:16

Alignment explanation


    Indices: 427--461  Score: 52
    Period size: 16  Copynumber: 2.2  Consensus size: 16

        417 TATCGGGTAT

                   *        
        427 TTTATTTCCTAGCGTA
          1 TTTATTTACTAGCGTA

                    *       
        443 TTTATTTATTAGCGTA
          1 TTTATTTACTAGCGTA

               
        459 TTT
          1 TTT

        462 GCTCTTTCTT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.20, C:0.11, G:0.11, T:0.57


Consensus pattern (16 bp):   
TTTATTTACTAGCGTA
Done.