Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021670.1 Corchorus olitorius cultivar O-4 contig21703, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2364
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33


Found at i:186 original size:16 final size:16

Alignment explanation


    Indices: 165--195  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

        155 AAAAGCTCAG

                    *       
        165 TTAATAAGGTTACTAA
          1 TTAATAAGATTACTAA

                           
        181 TTAATAAGATTACTA
          1 TTAATAAGATTACTA

        196 TACAACTTGA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.45, C:0.06, G:0.10, T:0.39


Consensus pattern (16 bp):   
TTAATAAGATTACTAA
Done.