Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021673.1 Corchorus olitorius cultivar O-4 contig21706, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7944
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.31


Found at i:5727 original size:3 final size:3

Alignment explanation


    Indices: 5704--5742  Score: 55
    Period size: 3  Copynumber: 13.7  Consensus size: 3

       5694 GGAGGTGGGG

                                    *                             
       5704 GAA G-A GAA -AA GAA GAA AAA GAA GAA GAA GAA GAA GAA GA
          1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA

       5743 GAGTTGGTCA


Statistics
Matches: 32,  Mismatches: 2, Indels: 4
        0.84            0.05        0.11

Matches are distributed among these distances:
   2    4  0.12
   3   28  0.88

ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00


Consensus pattern (3 bp):   
GAA

Done.