Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021676.1 Corchorus olitorius cultivar O-4 contig21709, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8654
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35


Found at i:3721 original size:25 final size:27

Alignment explanation


    Indices: 3692--3741  Score: 68
    Period size: 25  Copynumber: 1.9  Consensus size: 27

       3682 TTCCGAAAAC

                 *                     
       3692 TAGATTCAA-TTATT-TTCCTTTGGCG
          1 TAGATCCAATTTATTCTTCCTTTGGCG

                              *      
       3717 TAGATCCAATTTATTCTTGCTTTGG
          1 TAGATCCAATTTATTCTTCCTTTGG

       3742 TCTTTGTTTT


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  25    8  0.38
  26    5  0.24
  27    8  0.38

ACGTcount: A:0.20, C:0.16, G:0.16, T:0.48


Consensus pattern (27 bp):   
TAGATCCAATTTATTCTTCCTTTGGCG
Done.