Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021680.1 Corchorus olitorius cultivar O-4 contig21713, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13181
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33


Found at i:756 original size:21 final size:21

Alignment explanation


    Indices: 730--779  Score: 75
    Period size: 21  Copynumber: 2.4  Consensus size: 21

        720 TGCTAGGAGA

                                  
        730 TCATTGGAGCAA-GTTCCAAGC
          1 TCATTGGAG-AAGGTTCCAAGC

                           *     
        751 TCATTGGAGAAGGTTTCAAGC
          1 TCATTGGAGAAGGTTCCAAGC

                    
        772 TCATTGGA
          1 TCATTGGA

        780 ATTGTCTAAG


Statistics
Matches: 27,  Mismatches: 1, Indels: 2
        0.90            0.03        0.07

Matches are distributed among these distances:
  20    2  0.07
  21   25  0.93

ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28


Consensus pattern (21 bp):   
TCATTGGAGAAGGTTCCAAGC
Done.