Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021682.1 Corchorus olitorius cultivar O-4 contig21715, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22797

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
744--781
19
2.0
19
94
0
67
18
21
13
47
1.82
3392--3433
16
2.6
16
100
0
84
28
42
14
14
1.84
4218--4264
13
3.8
12
78
13
51
40
0
4
55
1.19
4384--4427
23
1.9
23
85
0
61
34
43
15
6
1.74
4429--4509
32
2.5
32
84
4
101
38
33
17
11
1.85
4526--4581
29
1.9
29
100
0
112
37
14
23
25
1.92
9515--9554
18
2.2
18
86
4
53
45
5
20
30
1.72
9504--9564
30
2.0
30
84
6
79
44
6
18
31
1.75
11817--11846
6
5.0
6
91
0
51
36
13
33
16
1.88
15346--15401
29
1.9
29
89
7
87
19
14
10
55
1.68
18096--18126
7
4.4
7
95
0
53
67
0
3
29
1.06
18757--18832
25
3.0
25
100
0
152
60
7
19
11
1.55
19820--19911
47
2.0
47
93
0
157
46
21
14
17
1.83
19963--20012
24
2.1
24
88
0
73
50
4
34
12
1.58
20643--20693
5
9.8
5
93
2
66
39
0
3
56
1.18
20643--20705
20
3.4
19
80
8
67
38
3
3
55
1.32
22012--22046
17
2.0
18
88
5
54
45
5
0
48
1.26
22499--22533
13
2.8
12
91
8
61
40
8
0
51
1.33

Tables:   1

The End!