Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021683.1 Corchorus olitorius cultivar O-4 contig21716, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23477

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
491--667
88
2.0
88
100
0
354
47
14
12
25
1.79
2828--2912
42
2.0
42
100
0
170
23
14
4
57
1.56
3821--3909
12
7.7
12
71
14
62
41
1
2
55
1.20
3847--3956
29
3.8
29
71
20
79
43
0
1
53
1.17
3821--3948
65
1.9
69
89
9
203
41
0
2
55
1.18
3804--3942
36
3.9
36
73
11
128
39
0
2
57
1.16
5559--5651
49
2.0
47
91
6
152
38
21
5
34
1.76
8325--8414
37
2.4
37
90
0
144
27
31
8
32
1.87
8732--8784
23
2.3
23
90
0
79
3
16
49
30
1.64
9099--9180
31
2.6
31
90
0
128
54
9
7
28
1.59
10552--10720
71
2.4
71
95
0
311
21
15
17
45
1.85
10584--10697
38
3.1
38
60
16
87
21
13
19
45
1.84
10849--10882
16
2.1
16
94
0
59
32
11
17
38
1.86
13058--13154
45
2.2
45
92
1
160
37
23
5
34
1.77
15080--15124
15
2.9
15
80
6
54
51
13
0
35
1.41
20234--20281
21
2.3
20
82
3
60
60
2
18
18
1.46

Tables:   1

The End!