Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021690.1 Corchorus olitorius cultivar O-4 contig21723, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 882

Length: 1471
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35


Found at i:564 original size:14 final size:13

Alignment explanation


    Indices: 541--574  Score: 50
    Period size: 14  Copynumber: 2.5  Consensus size: 13

        531 CTTTACTTTG

                         
        541 TTTTTTTTTGTGT
          1 TTTTTTTTTGTGT

                          
        554 TTTTGTTTTTGTGT
          1 TTTT-TTTTTGTGT

                   
        568 TCTTTTT
          1 T-TTTTT

        575 GGAACTCTAT


Statistics
Matches: 19,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  13    4  0.21
  14   12  0.63
  15    3  0.16

ACGTcount: A:0.00, C:0.03, G:0.15, T:0.82


Consensus pattern (13 bp):   
TTTTTTTTTGTGT

Found at i:1139 original size:22 final size:22

Alignment explanation


    Indices: 1111--1156  Score: 74
    Period size: 22  Copynumber: 2.1  Consensus size: 22

       1101 AAAATCTCCT

                       *          
       1111 AATTCAACCTTTGGAGAGGTCG
          1 AATTCAACCTTCGGAGAGGTCG

                         *        
       1133 AATTCAACCTTCGTAGAGGTCG
          1 AATTCAACCTTCGGAGAGGTCG

              
       1155 AA
          1 AA

       1157 ACAACAACTT


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26


Consensus pattern (22 bp):   
AATTCAACCTTCGGAGAGGTCG
Done.