Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021692.1 Corchorus olitorius cultivar O-4 contig21725, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3434
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28


Found at i:1356 original size:25 final size:27

Alignment explanation


    Indices: 1312--1363  Score: 81
    Period size: 25  Copynumber: 2.0  Consensus size: 27

       1302 TTATTTTTCT

                                        
       1312 TTTTTGCGTTTTTTCTAAAA-AAAAAAG
          1 TTTTTGCG-TTTTTCTAAAATAAAAAAG

                                      
       1339 TTTTTGCG-TTTTCTAAAATAAAAAA
          1 TTTTTGCGTTTTTCTAAAATAAAAAA

       1364 AAAAATTTGT


Statistics
Matches: 24,  Mismatches: 0, Indels: 3
        0.89            0.00        0.11

Matches are distributed among these distances:
  25   10  0.42
  26    6  0.25
  27    8  0.33

ACGTcount: A:0.38, C:0.08, G:0.10, T:0.44


Consensus pattern (27 bp):   
TTTTTGCGTTTTTCTAAAATAAAAAAG

Done.