Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021694.1 Corchorus olitorius cultivar O-4 contig21727, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3535
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29


Found at i:2036 original size:33 final size:34

Alignment explanation


    Indices: 1966--2105  Score: 121
    Period size: 33  Copynumber: 4.2  Consensus size: 34

       1956 ATGATCAACC

                                      ** *      
       1966 AAAACAG-ATTT-GTTTTCATCACAATTAGCATCC-
          1 AAAACAGAATTTAG-TTTCATCACAAACAACA-CCT

                                              
       1999 AAAACAGAATTT-GTTTCATCACAAACAACACCT
          1 AAAACAGAATTTAGTTTCATCACAAACAACACCT

                           *                * 
       2032 AAAACA-AATTTAGTGTCATCACAAACAACACTT
          1 AAAACAGAATTTAGTTTCATCACAAACAACACCT

               **   *      *       *       *  
       2065 AAAGTAG-GTTTAGTATCATCACTAACAACATCT
          1 AAAACAGAATTTAGTTTCATCACAAACAACACCT

                    
       2098 AAAACAGA
          1 AAAACAGA

       2106 TTTCATGTCA


Statistics
Matches: 88,  Mismatches: 14, Indels: 9
        0.79            0.13        0.08

Matches are distributed among these distances:
  32    7  0.08
  33   76  0.86
  34    5  0.06

ACGTcount: A:0.44, C:0.21, G:0.09, T:0.26


Consensus pattern (34 bp):   
AAAACAGAATTTAGTTTCATCACAAACAACACCT
Done.