Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021695.1 Corchorus olitorius cultivar O-4 contig21728, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12293
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.31


Found at i:1625 original size:26 final size:23

Alignment explanation


    Indices: 1595--1641  Score: 67
    Period size: 26  Copynumber: 1.9  Consensus size: 23

       1585 CTTGAAAATT

                                      
       1595 TGAAAAACTTTGATGGATGAGATGGA
          1 TGAAAAAC-TTGAT-GAT-AGATGGA

                                 
       1621 TGAAAAACTTGATGATAGATG
          1 TGAAAAACTTGATGATAGATG

       1642 AATAGAAGGA


Statistics
Matches: 21,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  23    5  0.24
  24    3  0.14
  25    5  0.24
  26    8  0.38

ACGTcount: A:0.40, C:0.04, G:0.28, T:0.28


Consensus pattern (23 bp):   
TGAAAAACTTGATGATAGATGGA

Found at i:11963 original size:11 final size:11

Alignment explanation


    Indices: 11947--11972  Score: 52
    Period size: 11  Copynumber: 2.4  Consensus size: 11

      11937 AGATAATTTC

                       
      11947 TTTTCTTCTAG
          1 TTTTCTTCTAG

                       
      11958 TTTTCTTCTAG
          1 TTTTCTTCTAG

                
      11969 TTTT
          1 TTTT

      11973 TAGGCAAAGG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   15  1.00

ACGTcount: A:0.08, C:0.15, G:0.08, T:0.69


Consensus pattern (11 bp):   
TTTTCTTCTAG
Done.