Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021698.1 Corchorus olitorius cultivar O-4 contig21731, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104331

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
338--406
36
1.9
36
87
0
102
59
8
10
21
1.57
19078--19112
11
2.9
12
87
12
54
77
0
8
14
0.99
19970--20042
30
2.4
30
83
2
92
26
27
16
30
1.97
20089--20120
11
3.1
11
86
13
50
6
15
0
78
0.95
20088--20128
18
2.1
19
86
13
57
7
12
0
80
0.90
20088--20128
9
4.2
10
79
14
50
7
12
0
80
0.90
23972--24000
12
2.3
13
94
5
51
17
3
34
44
1.65
32127--32180
24
2.2
24
93
0
90
25
12
35
25
1.92
46322--46407
43
2.0
43
97
0
163
26
18
13
40
1.88
48231--48258
1
28.0
1
100
0
56
0
0
0
100
0.00
49566--49591
4
6.5
4
100
0
52
53
23
0
23
1.46
49912--50501
102
5.8
102
79
6
559
28
26
10
34
1.89
49899--50476
306
1.9
308
82
6
724
28
26
10
34
1.89
55801--55839
19
2.1
19
85
0
51
10
10
5
74
1.21
60289--60327
19
2.1
19
95
0
69
28
7
25
38
1.83
65714--65783
36
1.9
36
94
0
122
41
14
5
38
1.69
66371--66427
20
2.6
23
75
18
66
42
12
14
31
1.82
66781--66839
3
19.7
3
100
0
118
66
0
0
33
0.92
67336--67398
23
2.8
22
82
2
72
41
15
11
31
1.83
67310--67429
45
2.7
45
80
6
120
39
18
10
31
1.85
67269--67656
22
17.8
22
71
10
224
36
16
10
37
1.82
67494--67551
23
2.5
23
97
0
107
41
15
5
37
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67535--67567
16
2.0
17
94
5
59
45
6
6
42
1.53
69653--69711
22
2.7
22
86
5
75
42
8
10
38
1.69
69898--69980
22
3.8
22
73
0
85
37
12
12
38
1.80
69855--70063
22
9.5
23
70
16
74
33
15
11
40
1.82
70007--70061
20
2.5
22
76
23
55
34
16
7
41
1.76
69921--70247
22
14.8
21
67
17
105
33
16
10
38
1.83
70265--70483
22
9.9
21
73
8
150
37
16
10
34
1.84
70265--70487
66
3.3
66
80
5
234
38
17
10
34
1.84
79894--79919
11
2.4
11
100
0
52
0
0
7
92
0.39
80264--80288
2
12.5
2
100
0
50
0
0
48
52
1.00
88489--88519
2
15.5
2
93
0
53
3
51
0
45
1.17
89608--89652
23
2.0
23
86
8
65
35
22
17
24
1.95
90994--91364
184
2.0
187
91
4
606
23
16
17
42
1.89
96284--96324
16
2.5
17
81
18
59
31
2
2
63
1.20
96938--96962
13
1.9
13
100
0
50
52
0
8
40
1.31
99031--99188
84
1.9
84
85
0
217
25
23
12
38
1.90

Tables:   1

The End!