Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021701.1 Corchorus olitorius cultivar O-4 contig21734, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4378
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33


Found at i:416 original size:2 final size:2

Alignment explanation


    Indices: 409--436  Score: 56
    Period size: 2  Copynumber: 14.0  Consensus size: 2

        399 TGGAAATTAG

                                                     
        409 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        437 TTAAAAAAAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   26  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:476 original size:20 final size:20

Alignment explanation


    Indices: 451--490  Score: 64
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        441 AAAAAAATAG

                                 
        451 GAAAGAAGAAG-AAGAAAAAA
          1 GAAAGAA-AAGAAAGAAAAAA

                                
        471 GAAAGAAAAGAAAGAAAAAA
          1 GAAAGAAAAGAAAGAAAAAA

        491 AAAATCATGA


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  19    3  0.16
  20   16  0.84

ACGTcount: A:0.78, C:0.00, G:0.23, T:0.00


Consensus pattern (20 bp):   
GAAAGAAAAGAAAGAAAAAA
Done.