Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021705.1 Corchorus olitorius cultivar O-4 contig21738, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14150

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32--715
39
17.9
39
89
4
1065
30
16
18
34
1.93
32--715
115
6.0
115
92
2
1085
30
16
18
34
1.93
32--715
154
4.5
152
91
4
1031
30
16
18
34
1.93
731--913
32
5.7
31
77
13
158
24
26
15
33
1.95
713--907
63
3.0
63
87
5
266
23
26
14
35
1.93
711--906
31
6.0
33
75
14
176
23
27
14
35
1.93
1141--1204
20
3.0
20
76
14
65
31
7
21
39
1.82
9849--9915
25
2.7
25
82
11
75
61
0
37
1
1.05
9862--9905
22
2.0
22
82
8
54
63
0
36
0
0.95
10619--10693
22
3.4
21
78
7
78
53
2
29
14
1.55
10605--10693
44
2.0
44
84
4
117
53
2
30
13
1.52
10733--10992
47
5.5
47
91
0
394
49
7
20
22
1.74
11003--11223
22
10.1
22
83
6
270
57
6
23
11
1.58
11006--11219
109
2.0
110
87
6
319
57
7
23
11
1.58
11197--11292
47
2.0
47
84
11
126
52
7
20
19
1.70

Tables:   1

The End!