Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021706.1 Corchorus olitorius cultivar O-4 contig21739, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4027
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31


Found at i:4003 original size:2 final size:2

Alignment explanation


    Indices: 3996--4024  Score: 58
    Period size: 2  Copynumber: 14.5  Consensus size: 2

       3986 GATGACAATA

                                                       
       3996 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       4025 CTA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.