Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021709.1 Corchorus olitorius cultivar O-4 contig21742, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1912
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27


Found at i:720 original size:17 final size:18

Alignment explanation


    Indices: 693--726  Score: 52
    Period size: 17  Copynumber: 1.9  Consensus size: 18

        683 CAAACAAATA

                        *     
        693 AAAGAAAACATGCAAGAC
          1 AAAGAAAACATGAAAGAC

                             
        711 AAAG-AAACATGAAAGA
          1 AAAGAAAACATGAAAGA

        727 AATGGAACCA


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17   11  0.73
  18    4  0.27

ACGTcount: A:0.65, C:0.12, G:0.18, T:0.06


Consensus pattern (18 bp):   
AAAGAAAACATGAAAGAC
Done.