Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021712.1 Corchorus olitorius cultivar O-4 contig21745, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4904
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32


Found at i:1170 original size:27 final size:29

Alignment explanation


    Indices: 1099--1173  Score: 100
    Period size: 29  Copynumber: 2.7  Consensus size: 29

       1089 AGGATCACCT

                               *         
       1099 AGGGGCATTTTGGTCATTTTCAAAAATCA
          1 AGGGGCATTTTGGTCATTTGCAAAAATCA

                       *           * *   
       1128 AGGGGCATTTTAGTCATTTGC-ATATTC-
          1 AGGGGCATTTTGGTCATTTGCAAAAATCA

                               
       1155 AGGGGCATTTTGGTCATTT
          1 AGGGGCATTTTGGTCATTT

       1174 TAAGTCCACG


Statistics
Matches: 41,  Mismatches: 5, Indels: 2
        0.85            0.10        0.04

Matches are distributed among these distances:
  27   18  0.44
  28    4  0.10
  29   19  0.46

ACGTcount: A:0.24, C:0.13, G:0.24, T:0.39


Consensus pattern (29 bp):   
AGGGGCATTTTGGTCATTTGCAAAAATCA
Done.