Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021715.1 Corchorus olitorius cultivar O-4 contig21748, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15505
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.31


Found at i:9274 original size:16 final size:16

Alignment explanation


    Indices: 9253--9285  Score: 57
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       9243 TAGATGATGA

                  *         
       9253 TTTGAATAATAATTAT
          1 TTTGAAAAATAATTAT

                            
       9269 TTTGAAAAATAATTAT
          1 TTTGAAAAATAATTAT

             
       9285 T
          1 T

       9286 ATTTATTTAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48


Consensus pattern (16 bp):   
TTTGAAAAATAATTAT
Done.