Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021716.1 Corchorus olitorius cultivar O-4 contig21749, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16531

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
281--423
54
2.6
55
94
1
243
35
13
23
26
1.93
282--445
54
3.0
55
90
2
242
34
14
25
26
1.94
416--773
64
5.6
64
88
1
475
35
15
22
26
1.94
1003--1284
50
5.6
50
94
0
483
34
10
28
25
1.90
1516--1595
29
2.9
28
81
10
101
23
12
22
41
1.88
1717--1771
22
2.5
22
93
0
92
21
16
12
49
1.79
2838--2906
34
2.0
34
100
0
138
42
20
14
23
1.89
3699--3753
28
2.0
28
96
0
101
41
14
18
25
1.88
7974--8026
27
2.0
27
85
7
72
41
3
0
54
1.18
10838--10869
8
3.9
8
95
4
55
37
0
0
62
0.95
12728--12825
22
4.6
21
81
5
99
35
7
13
43
1.71
12729--12829
43
2.4
42
84
1
121
36
7
11
43
1.71
12751--12825
20
3.6
20
84
8
87
37
8
12
42
1.71
13137--13186
25
2.0
26
88
4
75
38
4
6
52
1.45
16379--16436
27
2.2
26
84
3
71
25
6
37
29
1.82

Tables:   1

The End!