Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021726.1 Corchorus olitorius cultivar O-4 contig21759, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4642
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31


Found at i:1054 original size:37 final size:37

Alignment explanation


    Indices: 1011--1086  Score: 152
    Period size: 37  Copynumber: 2.1  Consensus size: 37

       1001 AAATAAATCT

                                                 
       1011 TCAATGGTCTTCAAGTCTCCAATTTATATTCAAATGG
          1 TCAATGGTCTTCAAGTCTCCAATTTATATTCAAATGG

                                                 
       1048 TCAATGGTCTTCAAGTCTCCAATTTATATTCAAATGG
          1 TCAATGGTCTTCAAGTCTCCAATTTATATTCAAATGG

              
       1085 TC
          1 TC

       1087 TTCAAACACG


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  37   39  1.00

ACGTcount: A:0.29, C:0.20, G:0.13, T:0.38


Consensus pattern (37 bp):   
TCAATGGTCTTCAAGTCTCCAATTTATATTCAAATGG

Found at i:2923 original size:21 final size:21

Alignment explanation


    Indices: 2899--2953  Score: 74
    Period size: 21  Copynumber: 2.6  Consensus size: 21

       2889 GGCTTGGAAT

                *            *   
       2899 GGTGATGGCACGGGCATGACC
          1 GGTGGTGGCACGGGCATAACC

                           *     
       2920 GGTGGTGGCACGGGCTTAACC
          1 GGTGGTGGCACGGGCATAACC

              *          
       2941 GGCGGTGGCACGG
          1 GGTGGTGGCACGG

       2954 TGAATGGGCG


Statistics
Matches: 30,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  21   30  1.00

ACGTcount: A:0.15, C:0.24, G:0.47, T:0.15


Consensus pattern (21 bp):   
GGTGGTGGCACGGGCATAACC
Done.