Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021729.1 Corchorus olitorius cultivar O-4 contig21762, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5364
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33


Found at i:1735 original size:14 final size:15

Alignment explanation


    Indices: 1716--1745  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       1706 CAATCAAAGC

                           
       1716 AATAAT-CAAGGAAA
          1 AATAATGCAAGGAAA

                           
       1730 AATAATGCAAGGAAA
          1 AATAATGCAAGGAAA

             
       1745 A
          1 A

       1746 TTAAAAAGAT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    6  0.40
  15    9  0.60

ACGTcount: A:0.63, C:0.07, G:0.17, T:0.13


Consensus pattern (15 bp):   
AATAATGCAAGGAAA

Done.