Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002173.1 Corchorus olitorius cultivar O-4 contig02173, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 783

Length: 1306
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.35


Found at i:1265 original size:30 final size:30

Alignment explanation


    Indices: 1206--1267  Score: 88
    Period size: 30  Copynumber: 2.1  Consensus size: 30

       1196 GTTAATAAGC

                           *     *        
       1206 CATTAAAATTTGAGGGTACAATAGAAAAGT
          1 CATTAAAATTTGAGGATACAAGAGAAAAGT

                              *     *     
       1236 CATTAAAATTTGAGGATATAAGAGGAAAGT
          1 CATTAAAATTTGAGGATACAAGAGAAAAGT

              
       1266 CA
          1 CA

       1268 ATATAAATAT


Statistics
Matches: 28,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  30   28  1.00

ACGTcount: A:0.47, C:0.06, G:0.21, T:0.26


Consensus pattern (30 bp):   
CATTAAAATTTGAGGATACAAGAGAAAAGT
Done.