Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002174.1 Corchorus olitorius cultivar O-4 contig02174, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1910
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.26


Found at i:508 original size:26 final size:26

Alignment explanation


    Indices: 459--510  Score: 68
    Period size: 26  Copynumber: 2.0  Consensus size: 26

        449 AAAAATAGAC

                *              *      
        459 AAATTAAACTAGAAAATAATAAAATA
          1 AAATAAAACTAGAAAATAAGAAAATA

                         * *          
        485 AAATAAAACTAGAGATTAAGAAAATA
          1 AAATAAAACTAGAAAATAAGAAAATA

        511 GTTTGAGAAA


Statistics
Matches: 22,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  26   22  1.00

ACGTcount: A:0.67, C:0.04, G:0.08, T:0.21


Consensus pattern (26 bp):   
AAATAAAACTAGAAAATAAGAAAATA
Done.