Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021753.1 Corchorus olitorius cultivar O-4 contig21786, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85505

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4667--4693
13
2.1
13
100
0
54
33
22
22
22
1.97
5488--5580
46
2.0
46
100
0
186
52
8
8
30
1.62
10330--10371
15
2.9
15
82
3
50
28
21
14
35
1.92
15225--15257
13
2.4
14
95
5
59
84
0
15
0
0.61
18510--18563
23
2.3
23
93
0
99
24
33
0
42
1.55
19046--19081
18
2.0
18
88
0
54
58
8
8
25
1.55
22032--22062
2
15.5
2
100
0
62
48
0
0
51
1.00
22961--23002
14
3.2
13
83
9
50
76
2
16
4
1.07
23481--23541
29
2.1
29
87
6
88
44
14
0
40
1.46
26278--26303
11
2.4
11
100
0
52
15
0
0
84
0.62
26271--26308
19
2.1
19
90
5
60
15
0
0
84
0.63
28543--28570
3
9.3
3
100
0
56
32
67
0
0
0.91
47420--47461
10
4.3
10
81
6
59
16
0
19
64
1.30
56226--56253
5
5.6
5
100
0
56
82
0
0
17
0.68
58917--58960
14
2.9
15
80
10
54
40
11
11
36
1.77
58949--58982
15
2.3
15
90
5
52
26
20
8
44
1.81
67609--67650
7
5.9
7
78
15
50
7
14
14
64
1.48
81334--81364
10
2.9
11
90
9
55
61
9
9
19
1.54
81902--81948
6
7.8
6
97
0
76
17
29
31
21
1.96
83344--83375
15
2.1
15
100
0
64
46
0
46
6
1.27

Tables:   1

The End!