Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021754.1 Corchorus olitorius cultivar O-4 contig21787, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29898

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
598--691
6
15.7
6
89
0
125
18
28
31
21
1.96
4319--4447
45
2.9
45
92
1
206
24
5
28
41
1.77
5387--5516
45
2.9
45
91
2
199
42
27
5
24
1.76
5513--5557
21
2.1
22
95
4
83
37
26
13
22
1.91
8462--8802
33
10.6
33
69
14
187
49
2
19
28
1.62
8520--8566
24
2.0
24
82
0
58
42
4
19
34
1.70
8634--8687
17
3.2
17
74
10
58
59
0
22
18
1.38
8712--8856
33
4.2
33
76
14
100
46
0
19
33
1.55
8747--8848
34
2.8
38
78
10
99
49
0
19
31
1.49
17387--17430
22
2.0
23
86
8
65
25
20
31
22
1.98
18119--18179
31
2.0
31
87
6
88
31
18
4
45
1.70
22225--22268
21
2.1
21
100
0
88
29
20
18
31
1.96

Tables:   1

The End!