Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021757.1 Corchorus olitorius cultivar O-4 contig21790, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2021
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.28

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1422 original size:6 final size:6

Alignment explanation


    Indices: 1356--1420  Score: 112
    Period size: 6  Copynumber: 10.8  Consensus size: 6

       1346 CCTACTTTCA

                                                      *            
       1356 AGTCCG AGTCCG AGTCCG AGTCCG AGTCCG AGTCCG GGTCCG AGTCCG
          1 AGTCCG AGTCCG AGTCCG AGTCCG AGTCCG AGTCCG AGTCCG AGTCCG

                        *      
       1404 AGTCCG AGTCCA AGTCC
          1 AGTCCG AGTCCG AGTCC

       1421 AATAAGAAAT


Statistics
Matches: 56,  Mismatches: 3, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   6   56  1.00

ACGTcount: A:0.17, C:0.34, G:0.32, T:0.17


Consensus pattern (6 bp):   
AGTCCG
Done.