Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021762.1 Corchorus olitorius cultivar O-4 contig21795, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7418
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31


Found at i:3233 original size:21 final size:21

Alignment explanation


    Indices: 3185--3236  Score: 68
    Period size: 21  Copynumber: 2.5  Consensus size: 21

       3175 AAGGCAAGCT

                *                
       3185 TGACTGGGCAGGTGGCACGGA
          1 TGACCGGGCAGGTGGCACGGA

                            *   *
       3206 TGACCGGGCAGGTGGCTCGGG
          1 TGACCGGGCAGGTGGCACGGA

              *       
       3227 TGCCCGGGCA
          1 TGACCGGGCA

       3237 ATGGCCGGCT


Statistics
Matches: 27,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  21   27  1.00

ACGTcount: A:0.13, C:0.25, G:0.48, T:0.13


Consensus pattern (21 bp):   
TGACCGGGCAGGTGGCACGGA

Found at i:5959 original size:14 final size:15

Alignment explanation


    Indices: 5940--5970  Score: 55
    Period size: 14  Copynumber: 2.1  Consensus size: 15

       5930 AACTTCCTTG

                           
       5940 AAAAACTCAAAA-AA
          1 AAAAACTCAAAAGAA

                           
       5954 AAAAACTCAAAAGAA
          1 AAAAACTCAAAAGAA

              
       5969 AA
          1 AA

       5971 TTAGTAGTAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14   12  0.75
  15    4  0.25

ACGTcount: A:0.77, C:0.13, G:0.03, T:0.06


Consensus pattern (15 bp):   
AAAAACTCAAAAGAA
Done.