Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021763.1 Corchorus olitorius cultivar O-4 contig21796, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4753
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.31


Found at i:325 original size:12 final size:12

Alignment explanation


    Indices: 308--337  Score: 60
    Period size: 12  Copynumber: 2.5  Consensus size: 12

        298 AAATCATAGG

                        
        308 AAAATAATCATA
          1 AAAATAATCATA

                        
        320 AAAATAATCATA
          1 AAAATAATCATA

                  
        332 AAAATA
          1 AAAATA

        338 GGGTTAACTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   18  1.00

ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23


Consensus pattern (12 bp):   
AAAATAATCATA

Found at i:4251 original size:6 final size:6

Alignment explanation


    Indices: 4240--4319  Score: 97
    Period size: 6  Copynumber: 13.3  Consensus size: 6

       4230 GGTACCCGCA

                              *                  *      *     *    
       4240 AGTCCG AGTCCG AGTCGG AGTCCG AGTCCG AGCCCG AGCCCG AATCCG
          1 AGTCCG AGTCCG AGTCCG AGTCCG AGTCCG AGTCCG AGTCCG AGTCCG

                          *    *    *            
       4288 AGTCCG AGTCCG TGTCCA AGTGCG AGTCCG AG
          1 AGTCCG AGTCCG AGTCCG AGTCCG AGTCCG AG

       4320 AAGAATTTTA


Statistics
Matches: 62,  Mismatches: 12, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
   6   62  1.00

ACGTcount: A:0.19, C:0.33, G:0.34, T:0.15


Consensus pattern (6 bp):   
AGTCCG

Done.