Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021769.1 Corchorus olitorius cultivar O-4 contig21802, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18484

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2703--2740
15
2.5
15
86
0
58
18
7
21
52
1.70
5556--5764
22
9.4
22
74
7
145
35
7
17
38
1.79
5556--5764
66
3.1
68
80
10
186
35
7
17
38
1.79
5768--6186
22
18.9
22
71
11
185
38
9
16
35
1.81
5932--6030
21
4.5
22
77
15
89
41
9
15
34
1.78
6284--6511
22
10.6
22
71
14
136
41
9
13
35
1.77
6284--6511
44
5.3
43
73
13
166
41
9
13
35
1.77
6409--6511
45
2.3
44
85
8
129
38
10
12
37
1.78
6431--6522
22
4.1
22
78
4
69
35
9
15
39
1.80
6564--6615
22
2.3
23
83
3
61
36
13
11
38
1.81
15022--15079
28
2.1
28
96
0
107
18
25
31
24
1.98
17174--17252
31
2.5
31
80
9
81
27
11
16
44
1.82
17902--17969
15
4.7
15
71
18
54
35
7
10
47
1.66
17913--17968
29
1.9
29
82
7
69
35
5
10
48
1.61
17902--17992
44
2.1
43
81
6
103
32
6
13
47
1.68
17988--18016
6
4.8
6
100
0
58
17
0
31
51
1.45

Tables:   1

The End!