Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021771.1 Corchorus olitorius cultivar O-4 contig21804, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56899

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1856--2116
136
2.0
130
83
11
329
21
20
8
50
1.73
2909--2939
16
1.9
16
93
0
53
41
3
6
48
1.45
3989--4434
199
2.2
199
91
0
730
33
14
17
34
1.90
4850--4887
13
2.8
14
85
14
53
44
7
0
47
1.32
5226--5272
22
2.1
22
100
0
94
42
8
17
31
1.79
5974--6012
20
1.9
20
84
5
51
53
7
7
30
1.57
6439--6472
18
2.0
18
88
11
54
41
5
11
41
1.66
8349--8387
20
2.0
20
85
10
53
38
2
10
48
1.51
8425--8772
184
1.9
184
84
5
472
29
14
23
32
1.94
20850--20894
1
45.0
1
93
0
72
0
2
2
95
0.31
25102--25158
29
2.0
29
93
3
98
26
14
15
43
1.85
25306--25365
31
2.0
31
90
3
95
43
13
11
31
1.80
27698--27751
27
2.0
27
85
0
72
31
9
1
57
1.41
27877--27934
31
1.9
31
85
3
82
27
15
13
43
1.85
28047--28120
29
2.5
31
80
4
80
50
10
13
25
1.74
28593--28645
23
2.3
23
81
12
63
45
0
0
54
0.99
28633--28693
18
3.3
18
70
17
61
50
3
0
45
1.17
28609--28693
38
2.2
38
91
6
136
48
2
0
49
1.14
28997--29036
19
2.1
19
90
0
62
57
7
17
17
1.62
41302--41590
107
2.8
104
87
4
404
41
8
10
39
1.70
42285--42343
24
2.5
24
86
2
75
47
10
15
27
1.77
44385--44413
15
1.9
15
100
0
58
48
3
0
48
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44383--44438
11
4.9
11
71
16
51
50
3
1
44
1.29
45410--45449
12
3.3
12
85
0
53
52
30
7
10
1.62
52160--52260
51
2.0
51
92
0
166
20
15
15
47
1.82

Tables:   1

The End!