Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021774.1 Corchorus olitorius cultivar O-4 contig21807, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56107

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
178--414
93
2.5
93
92
6
377
50
2
10
36
1.49
2011--3223
604
2.0
609
89
2
1843
33
18
14
33
1.91
3775--3924
22
6.9
22
70
12
94
38
11
16
34
1.85
3843--3957
22
5.2
22
78
11
110
37
11
17
33
1.85
3810--3958
65
2.2
67
82
8
171
36
11
18
33
1.86
4009--4329
22
14.4
21
70
17
170
38
9
17
34
1.83
7411--7971
22
25.7
22
67
11
116
37
9
16
37
1.81
7755--7884
45
2.9
44
80
10
106
34
11
16
36
1.85
9432--9711
41
6.6
43
75
12
224
23
7
26
42
1.81
9423--9714
85
3.5
85
89
2
412
23
8
26
42
1.82
13069--13132
30
2.1
30
88
0
92
42
10
10
35
1.75
14518--14546
2
14.5
2
100
0
58
51
0
0
48
1.00
27250--27274
2
12.5
2
100
0
50
52
0
0
48
1.00
27543--27567
2
12.5
2
100
0
50
48
0
0
52
1.00
30819--30847
3
10.0
3
92
7
51
34
0
0
65
0.93
37426--37466
21
2.0
21
85
9
57
58
2
0
39
1.11
53516--53676
80
2.0
80
100
0
322
37
22
18
21
1.94
54993--56100
160
6.7
160
72
13
738
31
15
15
37
1.89

Tables:   1

The End!