Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021775.1 Corchorus olitorius cultivar O-4 contig21808, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23297

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--391
170
2.3
170
92
2
612
32
13
14
38
1.86
1492--2040
111
4.9
112
79
4
480
34
16
18
30
1.93
1520--2040
221
2.3
227
80
3
570
33
16
18
30
1.93
4023--4061
14
2.9
13
80
3
51
41
2
2
53
1.28
5633--5664
2
17.0
2
87
12
50
46
0
0
53
1.00
19984--20017
2
17.0
2
93
0
59
47
0
2
50
1.16
21300--21410
37
3.1
35
79
11
84
33
23
9
34
1.86
21312--21413
37
3.0
33
83
10
132
31
23
8
36
1.86
21810--23297
333
4.5
332
83
4
1770
37
16
14
32
1.89

Tables:   1

The End!